Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0516 ATGGCGGAGCCAACCAAGTACATTTCGCAGGAAGACCTCGGCAAACACAACAAAACTGGAGATCTATGGATCTCTATACAGGGCAAGATCTACGATGTCTCCGATTGGAGTAAAGATCACCCGGGCGGTGAGCTTCCATTGTTCAATCTCGCCGGCCAGGATGTCACAAACGCTTTCGTGGCTTTCCATCCGGGCTCTGCGTGGCAATATCTTGACAAGTTTTTCACCGGCTATTATCTCCGGGACTACTCTGTATCCGAGGTGTCTAAAGATTATCGGAAACTTTTATCGGAGTTCTCGAAAATGGGTTTATTTGAACAGAAAGGACACGGAGTTTTCTATACATTCTCCTTCATGGCATTCTTCTTTTTGCTGTCCCTTTATGGTGTTTTGTACTCTAGTAGCCCGTGGGTGCATTTGGGCTGCGGTGTGCTAATCGGGTTCTTGTGGATTCAGAGCGGGTGGATTGGACATGACTCTGGGCACTACCAGGTCATGACAAGCCGGGGTTTCAATCGGTTCGCTCAGATCCTTACTGGGAACTGTCTTGCAGGCATCAGTATTGAATGGTGGAAGCGAAACCACAACGCCCATCACATCGCTTGTAACAGTCTCGAATTCGATCCTGATGTTCAGCATTTGCCTTTCTTTGTGGTATCTTCGAAATTTTTCAATTCCCTTACATCTTGCTACTATGAGAGGAAGATGAGTTTTGATTCTGTGTCAAGATTATTGGTTAGCTATCAGCATTGGACATTTTATCCTGTAATGTGCTTTGCTAGATTAAACTTATTCGCCCAATCGTTCATCTTACTGTTAGCCAAGAGAAAGGTACCCAATAGGGCCCAGGAGCTTCTGGGGCTGCTTGTTTTCTGGATTTGGTATCCTCTACTGGTTTCCTGCTTACCCAATTGGGCTGAAAGAATATTGTTCGTCGTTGTTAGTTTTTCTGTCACTGGAATACAACATGTTCAGTTCTGTTTGAATCACTTCTCATCCAGTGTGTACGTTGGCCCTCCAAACGCGAGTGATTGGTTTGAAAAGCAGATCAGTGGGACGCTTGATGTAAAATGCTCGGCTTGGATGGATTGGTTTCATGGTGGATTGCAATTCCAGGCGGCACATCATCTGTTTCCTCGGTTGCCCCGGTGCCATCTGAGGAAAGTCTCGCCTCTGGTTAAGGAGCTGTGCAGAAAACATAATTTGCCTTACAATTGTGTGTCATTCTGGAAAGCCAATGTACTAACAATTCGGACACTCCGCAATGCTGCCTTGCAGGCTCGCGATCTTTCTAATCCCATTCCCAAAAATTTAGTTTGGGAAGCTGTTAATACTCATGGATGA 1344 0.4561 MAEPTKYISQEDLGKHNKTGDLWISIQGKIYDVSDWSKDHPGGELPLFNLAGQDVTNAFVAFHPGSAWQYLDKFFTGYYLRDYSVSEVSKDYRKLLSEFSKMGLFEQKGHGVFYTFSFMAFFFLLSLYGVLYSSSPWVHLGCGVLIGFLWIQSGWIGHDSGHYQVMTSRGFNRFAQILTGNCLAGISIEWWKRNHNAHHIACNSLEFDPDVQHLPFFVVSSKFFNSLTSCYYERKMSFDSVSRLLVSYQHWTFYPVMCFARLNLFAQSFILLLAKRKVPNRAQELLGLLVFWIWYPLLVSCLPNWAERILFVVVSFSVTGIQHVQFCLNHFSSSVYVGPPNASDWFEKQISGTLDVKCSAWMDWFHGGLQFQAAHHLFPRLPRCHLRKVSPLVKELCRKHNLPYNCVSFWKANVLTIRTLRNAALQARDLSNPIPKNLVWEAVNTHG 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0516 447 SMART Cyt_b5_2 8 80 IPR001199 -
Glsi10g0516 447 CDD Delta6-FADS-like 140 402 - -
Glsi10g0516 447 PIRSF FA_sphingolip_des 1 434 IPR012171 GO:0016491
Glsi10g0516 447 Pfam Fatty acid desaturase 137 406 IPR005804 GO:0006629
Glsi10g0516 447 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 89 IPR001199 -
Glsi10g0516 447 Gene3D - 1 85 IPR036400 -
Glsi10g0516 447 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 3 82 IPR036400 -
Glsi10g0516 447 PANTHER FATTY ACID DESATURASE 2 5 429 IPR012171 GO:0016491
Glsi10g0516 447 Pfam Cytochrome b5-like Heme/Steroid binding domain 10 79 IPR001199 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0516 Glsi-ChrGlsi10 3262418 3263761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0516 1 447 Lipid Metabolism Gene Families AT2G46210 65.479 0.0 652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0516 10 3262418 3263761 Glsi10g0516 10 3262418 3263761 ECH