Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0503 ATGGAACGGAGGTCGAGCTCTTTGACGATAGGAGAACGAATCTGTGCGGCGTTCGTACCGTGTATAGCTATTATTGAGGTTTTAACGTTCTCTGTGACCGATTGTTTCAATTTTCGGCCACGCATCCAGAAATTTCGCTACAGTGCTAAAGATCTGGCGCAGCTGGCTAGCGAAACCAGATTTTCTGTAAATGAAGTGGAGGCATTGTATGAGCTGTTTAAGAAGTTAAGTAGCTCAATAATTGATGATGGTTTGATTCACAAGGAGGAGCTTCAATTGGCACTATTTCAAACCCCATATGGAGAAAATCTTTTCCTGGATCGGGTTTTTGATCTTTTTGACGAAAAGAGAAATGGTGTTATTGAGTTTGATGAATTTGTCCACGCACTTAGTGTTTTCCATCCTTGTGCCCCCATAGAAGAAAAAATTGATTTTGCATTTAGGCTGTACGATCTGAGGCAAACTGGGTATATTGAGCGAGAAGAAGTGAGTGTACTAAATTCATTTAGGACCTTGCAATTGTTGGCAATGCCTGGTATTAAGCAAATGGTTATAGCTATCTTGATGGAATCTGACACGAATCTGTCCGATGATCTTCTTGAAGCTATTGTTGACAAGACAATTGGTGATGCTGATAAGGACAATGATGGTAGAATCAGTAAAGAAGACTGGAAAGCTTTTGTGAGTCGAAAACCATCTCTCTTGAAGAACATGACACTTCCTTATTTGAAAGCTGCATCTAAACCCACAACTCAAAGCAATGGCAGACAAGCCGAGCCGAGCTCTGGTCTTGTTTGGAGACGGGTTGGCCCGTTAATCGACTCATCACATGCTCACCTTCATTCTCGAGCTTCCAAAGCTTTCTGCAGAGTATGTCAGATGTCAACTTGCGATGTCGACTGTGTCCTATAG 912 0.4211 MERRSSSLTIGERICAAFVPCIAIIEVLTFSVTDCFNFRPRIQKFRYSAKDLAQLASETRFSVNEVEALYELFKKLSSSIIDDGLIHKEELQLALFQTPYGENLFLDRVFDLFDEKRNGVIEFDEFVHALSVFHPCAPIEEKIDFAFRLYDLRQTGYIEREEVSVLNSFRTLQLLAMPGIKQMVIAILMESDTNLSDDLLEAIVDKTIGDADKDNDGRISKEDWKAFVSRKPSLLKNMTLPYLKAASKPTTQSNGRQAEPSSGLVWRRVGPLIDSSHAHLHSRASKAFCRVCQMSTCDVDCVL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0503 303 ProSitePatterns EF-hand calcium-binding domain. 212 224 IPR018247 -
Glsi10g0503 303 Pfam EF hand 106 126 IPR002048 GO:0005509
Glsi10g0503 303 ProSiteProfiles EF-hand calcium-binding domain profile. 199 234 IPR002048 GO:0005509
Glsi10g0503 303 Pfam EF-hand domain pair 140 227 IPR002048 GO:0005509
Glsi10g0503 303 CDD EFh 142 229 IPR002048 GO:0005509
Glsi10g0503 303 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Glsi10g0503 303 SMART efh_1 203 231 IPR002048 GO:0005509
Glsi10g0503 303 SMART efh_1 105 133 IPR002048 GO:0005509
Glsi10g0503 303 SMART efh_1 142 169 IPR002048 GO:0005509
Glsi10g0503 303 Gene3D - 51 259 - -
Glsi10g0503 303 SUPERFAMILY EF-hand 52 244 IPR011992 -
Glsi10g0503 303 ProSiteProfiles EF-hand calcium-binding domain profile. 138 173 IPR002048 GO:0005509
Glsi10g0503 303 PANTHER CALCINEURIN B 46 246 IPR045198 GO:0005509|GO:0019722|GO:0019900
Glsi10g0503 303 FunFam calcineurin B-like protein 3 51 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0503 Glsi-ChrGlsi10 3205681 3209131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0503 4 207 EF-hand Containing Proteins AT4G33000 66.667 4.64e-88 259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0503 10 3205681 3209131 Glsi10g0503 10 3205681 3209131 ECH