Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0463 ATGGTGGATCAATACTCCTTTGCTTGGATCCTTTGCTCTGTGCTCACCCTTCTTGCTCTGTACCGTTTCGTTTTTCCCAGGAAGAACCCGATCCCTTCCTCCGAGGCGCCCGCTCAGTGCATCAAAAGTATAACCACCACTAACGAAGAATGTAGATCCAATATCCATGATGGAGAGGTTGACGTAATCATCGTCGGAGCTGGTGTTGCTGGCTCTGCTCTGGCTCACACTCTCGGCAAAGATGGACGCCGAGTGCATGTTGTTGAAAGAGATTTGAGTGAGCCTGACCGAATTGTTGGAGAGTTGCTACAACCTGGGGGCTATCTCAAATTACTTGAGCTTGGACTTGAAGATTGTGTGCAGGAAATTGACGCTCAGCAAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAAAATACTCGACTTTCTTATCCACTGGAGAAGTTTCACTCAGATGTCTCTGGCAGAAGCTTCCACAATGGACGTTTTATTCAGAGGATGAGGGAGAAGGCTGCCTCCCTTCCCAATATACGATTGGAGCAAGGAACAGTTACTTCCCTTCTTGAAGAGAAAGGGACAATTAAAGGTGTGCAATACAAGACTAAAGATGGACAAGAGTTTGCAACATATGCTCCTCTTACTATTGTTTGTGATGGCTGTTTCTCAAACTTGCGTCGTTCTCTTTGTAATCCTAAGGTAGATGTTCCCTCTTGTTTTGTTGGTTTGATTTTGGAGAACTGTGAACTTCCATATGCAAACCATGGCCACGTTATACTGGGAGATCCTTCGCCAATTTTGTTCTATCCTATAAGTAGTACTGAGATTCGCTGTCTGGTTGATGTACCTGGGCAGAAGGTGCCTTCTATTTCAAACGGTGAAATGGCCAAGTATTTGAAGACAGTCGTGGCACCACAGGTTCCCCCTGAGCTCTATGATGCCTTCATAGCTGCAGTGGACAAAGGCAACATAAGGACAATGCCGAACAGAAGCATGCCAGCGGCTCCTTATCCTACTCCTGGAGCACTTCTGATGGGAGATGCATTCAACATGCGCCATCCTCTAACTGGGGGAGGAATGACTGTGGCATTGTCTGATATTGTGGTGCTGCGGAATCTCCTCAGGCCTTTGCGTGACCTAAATGATGCATCCGCACTCTGCAAATATATTGAATCCTTTTATACCCTGCGTAAGCCAGTGGCATCCACCATAAATACGTTGGCAGGAGCTCTTTACAAGGTTTTTTGTGCATCTCCTGATCAGGCGAGGAGGGAAATGCGCCAAGCATGCTTTGATTATTTGAGTCTTGGAGGTGTATTCTCGGAAGGACCAGTCTCTTTACTTTCAGGATTGAACCCTCGTCCCTTGAGCTTGGTTCTCCATTTCTTTGCTGTTGCAATATTCGGTGTTGGCCGTTTGTTGCTACCATTTCCCTCGCCCAATCGGATTTGGATTGGAGCACGATTAATATCCGGCGCTTCAGGAATCATTTTTCCCATAATCAAGGCAGAAGGAGTTCGTCAGATGTTCTTCCCTGCCACTGTTCCAGCTTATTACAGAACTCCTCCGTCTGAATAA 1575 0.4641 MVDQYSFAWILCSVLTLLALYRFVFPRKNPIPSSEAPAQCIKSITTTNEECRSNIHDGEVDVIIVGAGVAGSALAHTLGKDGRRVHVVERDLSEPDRIVGELLQPGGYLKLLELGLEDCVQEIDAQQVFGYALFKDGKNTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAASLPNIRLEQGTVTSLLEEKGTIKGVQYKTKDGQEFATYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLILENCELPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKVPSISNGEMAKYLKTVVAPQVPPELYDAFIAAVDKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDASALCKYIESFYTLRKPVASTINTLAGALYKVFCASPDQARREMRQACFDYLSLGGVFSEGPVSLLSGLNPRPLSLVLHFFAVAIFGVGRLLLPFPSPNRIWIGARLISGASGIIFPIIKAEGVRQMFFPATVPAYYRTPPSE 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0463 524 FunFam Squalene monooxygenase 2 54 434 - -
Glsi10g0463 524 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Glsi10g0463 524 Pfam Squalene epoxidase 211 483 IPR013698 GO:0004506|GO:0016020|GO:0050660
Glsi10g0463 524 PANTHER SQUALENE MONOOXYGENASE 20 522 IPR040125 GO:0004506|GO:0016126
Glsi10g0463 524 SUPERFAMILY FAD/NAD(P)-binding domain 60 435 IPR036188 -
Glsi10g0463 524 Gene3D - 55 441 IPR036188 -
Glsi10g0463 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Glsi10g0463 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Glsi10g0463 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Glsi10g0463 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0463 Glsi-ChrGlsi10 2962778 2966916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0463 23 523 Miscellaneous Gene Families AT1G58440 78.728 0.0 824
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0463 10 2962778 2966916 Glsi10g0463 10 2962778 2966916 ECH