Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0370 ATGGCTGCATTTGGCCTCTTAATTTGGTCCCACATTCATCCCCCCCCATTTCCCATCCCTCTCTCACCTTCTTCGACAGTTTCTCTCCCAAATTCACATCAAATGGCTTCGTTTAGATCGCCCCCGGCCATGATCGTCCTCGTCTTCATGGTCTTCACCCTGTCATCAGCCTTGGACTTGTCCATCATCAACTACGATACAACTCACGGCCACAAGTCCACCTGGAGGACGGATGAGGAGGTCATGACCATTTACGAGCACTGGCTTGTAAAGCATGGCAAAGCCTACAACGCTTTGGGAGAGAAAGAGAAGAGGTTTGAGATCTTCAAGGACAACCTCAGGTTCATCGATGAGCACAACGCTGAGAATCGGACCTATAAGGTTGGGTTGAACCGGTTCGCGGATCTAACCAACGAGGAGTACCGAGCCAGGTACCTGGGAACCAGGGTTGATCCGAAGAGGAGGATTGCTAAGACCAGAAGCAACCGTTACGCTCCACTTGTCGGCGACAAATTACCGGAATCTGTAGATTGGAGGAAGGAAGGTGCCGTCGTCCCAGTCAAAGACCAAGGAAGTTGCGGGAGCTGCTGGGCATTTTCAACAGTCGCTGCAGTGGAAGGAATTAATAAGATAGTGACTGGAGATCTAATTTCACTATCAGAGCAAGAGCTGGTGGACTGTGATACATCTTATAACGAAGGATGTAATGGTGGACTCATGGACTACGGCTTTGAGTTCATCATCAATAATGGTGGCATTGACACCGAAGACGATTACCCCTACCGTGCTATTGATGGTAGATGTGACCAATACAGGAAAAATGCTAAAGTCGTTACAATTGATAAATACGAGGATGTTCCTCCCAATGACGAGGGGGCATTGAAAAAGGCTATTGCAAGTCAGCCAGTGAGCGTTGCCATTGAAGGTGGTGGCAGGGAATTCCAGTTATATATATCCGGTATATTTACGGGAAGATGTGGGACAGCATTAGACCACGGTGTTACTGCTGTCGGTTATGGTTCAGAAAATGGTGTTGATTATTGGATTGTGAAGAATTCATGGGGTGCGAGCTGGGGAGAGGAAGGCTATGTCAGAATGGAACGTAATCTGGGCACAAGCAATACTGGAAAATGTGGAATTGCGATGCAGTCTTCCTATCCCATCAAGAAAGGGGCAAATCCCCCCAACCCTGGACCATCTCCCCCTTCACCTGTGAAGCCACCAACTGTTTGTGATAATTACTATAGCTGTGCTGAGAGCACTACTTGCTGCTGCGTATACGAGTATGGTAAGTATTGCTTTTCGTGGGGATGCTGTCCTCTTGAGTCTGCCACTTGCTGTGAAGATCACTACAGTTGCTGCCCTCACGACTATCCCGTCTGTAACGTTGAGGCAGGGACCTGTCACCTGAGCAAGGACAATCCATTTGGAGTGAAGGCAATGAGGCGAACTCCAGCTAAACCCTATTGGGCTTTTGGAGGTGAGAACAAGTTAAGCAGTGCTTGA 1506 0.4847 MAAFGLLIWSHIHPPPFPIPLSPSSTVSLPNSHQMASFRSPPAMIVLVFMVFTLSSALDLSIINYDTTHGHKSTWRTDEEVMTIYEHWLVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNAENRTYKVGLNRFADLTNEEYRARYLGTRVDPKRRIAKTRSNRYAPLVGDKLPESVDWRKEGAVVPVKDQGSCGSCWAFSTVAAVEGINKIVTGDLISLSEQELVDCDTSYNEGCNGGLMDYGFEFIINNGGIDTEDDYPYRAIDGRCDQYRKNAKVVTIDKYEDVPPNDEGALKKAIASQPVSVAIEGGGREFQLYISGIFTGRCGTALDHGVTAVGYGSENGVDYWIVKNSWGASWGEEGYVRMERNLGTSNTGKCGIAMQSSYPIKKGANPPNPGPSPPSPVKPPTVCDNYYSCAESTTCCCVYEYGKYCFSWGCCPLESATCCEDHYSCCPHDYPVCNVEAGTCHLSKDNPFGVKAMRRTPAKPYWAFGGENKLSSA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0370 501 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 347 366 IPR025661 -
Glsi10g0370 501 FunFam Cysteine protease 1 408 471 - -
Glsi10g0370 501 SMART GRAN_2 411 468 IPR000118 -
Glsi10g0370 501 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 77 386 IPR013128 GO:0008234
Glsi10g0370 501 SMART pept_c1 172 388 IPR000668 GO:0006508|GO:0008234
Glsi10g0370 501 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 190 201 IPR000169 -
Glsi10g0370 501 Gene3D Granulin 408 470 IPR037277 -
Glsi10g0370 501 SUPERFAMILY Granulin repeat 408 442 - -
Glsi10g0370 501 Gene3D Cysteine proteinases 65 390 - -
Glsi10g0370 501 SMART Inhibitor_I29_2 85 141 IPR013201 -
Glsi10g0370 501 SUPERFAMILY Cysteine proteinases 76 388 IPR038765 -
Glsi10g0370 501 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 330 340 IPR025660 -
Glsi10g0370 501 FunFam Cysteine protease 1 61 390 - -
Glsi10g0370 501 Pfam Granulin 422 469 IPR000118 -
Glsi10g0370 501 Pfam Cathepsin propeptide inhibitor domain (I29) 85 141 IPR013201 -
Glsi10g0370 501 CDD Peptidase_C1A 173 387 IPR039417 -
Glsi10g0370 501 Pfam Papain family cysteine protease 172 388 IPR000668 GO:0006508|GO:0008234
Glsi10g0370 501 PRINTS Papain cysteine protease (C1) family signature 332 342 IPR000668 GO:0006508|GO:0008234
Glsi10g0370 501 PRINTS Papain cysteine protease (C1) family signature 347 353 IPR000668 GO:0006508|GO:0008234
Glsi10g0370 501 PRINTS Papain cysteine protease (C1) family signature 190 205 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0370 Glsi-ChrGlsi10 2415852 2421335 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0370 10 2415852 2421335 Glsi08g1851 08 13093075 13096739 CCT
Glsi10g0370 10 2415852 2421335 Glsi10g0370 10 2415852 2421335 ECH