Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0333 ATGACTTCCCTCCCTTGGCTCTGCAAGTTTTGCCTCTACCTTTCGTTGCTTCCCATTTTCGCATCCCCTGCTCTGCTGTTTCAGGGGTTCAACTGGGAATCAAGTAACAAAGGAGGATGGTACAACTCTCTGAAGAACTCCATCCCTGACCTGGCCAGTGCCGGAATTACCCATGTTTGGCTCCCTCCTCCCTCTCACTCTGTTGCCTCACAAGGATATCTTCCGGGAAGGCTATACGATCTCGATGCATCAAAATATGGTTCCAAGGACGAACTAAAGTCGCTGGTTGCAGCTTTCCATGATAAGAGGATTAAATGCCTGGCAGATATAGTCATCAATCACAGAACTGCAGAGAGGAAGGACGGGAGAGGAATCTATTGCATCTTTGAAGGTGGTACTCCAGATGCACGTCTCGACTGGGGTCCGTCTTTCATTTGCAGAGATGACACTGCCTATTCTGATGGCACCGGAAATCTTGATAGTGGGGAGGGTTATGACGCTGCACCCGACATTGACCATCTCAATCCTCAAGTTCAGAAAGAATTGTCAGATTGGATGAATTGGTTGAAGACTGAAATAGGATTTGATGGGTGGCGATTTGATTTTGTAAAAGGTTATGCCCCCAATATCACTAATATTTATATGCAACGAACTTCACCAGATTTCGCAGTTGGGGAGAAATGGGACTCTCTTTCTTATGGGCAGGATGGGAAACCGGAGCCGAACCAGGATGCCCATCGCGGTGCATTGGTTAATTGGGTGGAAGCCGCAGGAGGTGCCGTCACTGCCTTCGATTTCACAACCAAAGGTATTCTTCAAGCTGCCGTACAAGGGGAACTATGGAGGTTGAAAGATTCAAATGGAAAGCCACCGGGAATGATTGGGACAAAGCCAGAAAATGCTGTAACTTTTATTGACAACCATGACACGGGTTCCACTCAGAAAATTTGGCCATTCCCATCGGACAAAGTCATGCAGGGATACGCTTACATTCTAACACATCCTGGGACCCCAACCATATTCTATGATCACTTCCTTGACTGGGGCCTCAAGGAGGAGATAGGCAAGTTGAGTGCCGTAAGGACGAGGAATGGGATCAATGTGAAAAGCAAAGTGGACATTTTAGCAGCAGAAGCTGACCTGTATATGGCTAGAATGGACAACAAGATTATAATGAAGATTGGGCCCAAGATGGATCTGGGAGGACTCGTTCCCTCCAATTATCGGCTCGCTACCTCTGGCGAAGCCTATGCTGTGTGGGAGAGACACGATGCCTACCGTGTTGGATGCTCAAACCACTGA 1302 0.4777 MTSLPWLCKFCLYLSLLPIFASPALLFQGFNWESSNKGGWYNSLKNSIPDLASAGITHVWLPPPSHSVASQGYLPGRLYDLDASKYGSKDELKSLVAAFHDKRIKCLADIVINHRTAERKDGRGIYCIFEGGTPDARLDWGPSFICRDDTAYSDGTGNLDSGEGYDAAPDIDHLNPQVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPNITNIYMQRTSPDFAVGEKWDSLSYGQDGKPEPNQDAHRGALVNWVEAAGGAVTAFDFTTKGILQAAVQGELWRLKDSNGKPPGMIGTKPENAVTFIDNHDTGSTQKIWPFPSDKVMQGYAYILTHPGTPTIFYDHFLDWGLKEEIGKLSAVRTRNGINVKSKVDILAAEADLYMARMDNKIIMKIGPKMDLGGLVPSNYRLATSGEAYAVWERHDAYRVGCSNH 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0333 433 PIRSF Alpha-amylase_plant 2 423 IPR013775 GO:0004556|GO:0005509|GO:0005975
Glsi10g0333 433 Pfam Alpha amylase, catalytic domain 51 342 IPR006047 GO:0005975
Glsi10g0333 433 SMART alpha-amyl_c2 362 422 IPR012850 GO:0004556|GO:0005509|GO:0005975
Glsi10g0333 433 PRINTS Alpha-amylase signature 195 206 IPR006046 GO:0004556|GO:0005975|GO:0043169
Glsi10g0333 433 PRINTS Alpha-amylase signature 299 311 IPR006046 GO:0004556|GO:0005975|GO:0043169
Glsi10g0333 433 PRINTS Alpha-amylase signature 103 114 IPR006046 GO:0004556|GO:0005975|GO:0043169
Glsi10g0333 433 Gene3D - 366 422 IPR013780 -
Glsi10g0333 433 Gene3D Glycosidases 25 365 - -
Glsi10g0333 433 CDD AmyAc_arch_bac_plant_AmyA 26 372 - -
Glsi10g0333 433 SUPERFAMILY (Trans)glycosidases 23 360 IPR017853 -
Glsi10g0333 433 SMART aamy 24 361 IPR006047 GO:0005975
Glsi10g0333 433 Pfam Alpha-amylase C-terminal beta-sheet domain 363 421 IPR012850 GO:0004556|GO:0005509|GO:0005975
Glsi10g0333 433 SUPERFAMILY Glycosyl hydrolase domain 366 422 - -
Glsi10g0333 433 PANTHER ALPHA-AMYLASE 30 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0333 Glsi-ChrGlsi10 2160344 2161973 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0333 1 422 Glycoside Hydrolase AT4G25000 67.606 0.0 576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0333 10 2160344 2161973 Glsi10g0333 10 2160344 2161973 ECH