Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0314 ATGTCGGGTATGGAGAGGCTTCAAAGGATGTTTGCAGGTGCCGGAGGCGCATTGGGGCATCCACCCCCTGATTCACCCACCCTTGATTCCTCTGAGCAGGTTTATATCTCCTCGTTGGCCCTTCTCAAAATGCTTAAGCACGGAAGGGCTGGTGTTCCCATGGAAGTGATGGGTCTGATGTTGGGAGAGTTTGTGGATGAGTATACTGTCCGCGTTGTTGATGTTTTTGCGATGCCGCAGAGTGGTACGGGTGTTAGTGTTGAAGCCGTTGATCATGTTTTTCAGACTAACATGCTCGATATGCTGAAACAGACTGGAAGACCAGAAATGGTGGTGGGGTGGTATCATTCCCATCCTGGATTTGGCTGTTGGCTTTCTGGAGTGGACATTAATACACAACAGAGTTTTGAGGCTTTAAATCAACGTGCTGTGGCTGTGGTTGTGGATCCTATTCAAAGTGTTAAGGGCAAGGTGGTGATTGATGCTTTTCGGCTTATTAATCCACAGACTATGATGCTGGGTCAGGAACCACGGCAGACAACGTCTAACCTTGGTCATCTTAATAAACCATCTATACAAGCTTTGATCCATGGCTTGAACCGACATTATTATTCCATAGCCATCAATTACAGGAAGAATGAGCTTGAAGAGAAGATGTTACTTAACCTTCACAAGAAGAAATGGACTGATGGCTTAACACTCAGGCGATTTGATTCACATTCAAAAACTAATGAACAAACTGTTCAGGAGATGCTAAATTTAGCCATAAAGTACAATAAGGCAGTGCAAGAGGAGGATGAGCTGCCGCCGGAGAAGCTTGCAATTGCTAACGTGGGAAGGCAAGATGCTAAGAAGCACCTTGAAGAGCATGTTTCCAATTTGATGTCTTCAAATATAGTGCAGACTTTGGGAATGATGCTTGATACAGTTGTATTTTAG 939 0.4473 MSGMERLQRMFAGAGGALGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDSHSKTNEQTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0314 312 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 30 141 IPR000555 GO:0005515|GO:0008233|GO:0008237
Glsi10g0314 312 Pfam Maintenance of mitochondrial structure and function 176 299 IPR024969 -
Glsi10g0314 312 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 29 309 - -
Glsi10g0314 312 SMART pad1_6 33 168 IPR000555 GO:0005515|GO:0008233|GO:0008237
Glsi10g0314 312 SUPERFAMILY JAB1/MPN domain 34 171 - -
Glsi10g0314 312 CDD MPN_RPN11_CSN5 23 289 - -
Glsi10g0314 312 Gene3D Cytidine Deaminase, domain 2 20 237 - -
Glsi10g0314 312 FunFam 26S proteasome non-ATPase regulatory subunit 23 237 - -
Glsi10g0314 312 ProSiteProfiles MPN domain profile. 34 169 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0314 Glsi-ChrGlsi10 2056392 2059640 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0314 10 2056392 2059640 Glsi10g0314 10 2056392 2059640 ECH