Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0272 ATGGCGAAATCGAGCGCGGACGATGCTGAGCTCCGGCGAGCTTGCGAGGCTGCAATTGAGGGCACCAAGCAGAAGATCGTCATGTCGATCCGTGTTGCTAAGAGTCGCGGGATTTGGGGAAAATCCGGCATGTTAGGCCGTCAAATGGCCAAGCCCAGGGTTCTCGCTCTCTCCACAAAAGCAAAAGGTCAGAGGACAAAAGCTTTTCTTCGAGTTTTAAAGTATTCCACAGGAGGAGTTCTTGAGCCAGCAAAGCTATACAAGCTGAAACATCTCTCAAAAATGGAAGTTATAACAAATGATCCCAGTGGATGTACGTTTATGCTGGGATTTGATAACCTCAGAAGCCAGAGTGTAGCTCCTCCTCAGTGGACAATGCGCAATGTTGATGACAGGAACCGACTCCTATTTTGCATCTTAAATATATGCAAAGATGTGCTTGGTCGCCTTCCTAAAGTTGTTGGTATAGATGTTGTTGAGATGGCTCTCTGGGCTAAGGAAAATACACCCTCGGTTTCTGCTCAAAAGAACCTGCAAGATGGTGGTCCTGTTGCATCTGCTGCGACTGAGACAGAATTGAAAGTCACAGTAGAAAAGGAGCTGGTTTCCCAGGCTGAGGAAGAGGACATGGAGGCCCTTTTGGGAACTTATGTCATGGGTATTGGTGAAGCAGAGGTATTTTCTGAAAGGTTGAAGAGAGAGCTCCAGGCTTTGGAAGCTGCAAATGTGCATGCCATCTTAGAAAGTGAACCTTTGATAGATGAGGTGCTGAAGGGGCTTGAAGCAGCAACACATTGTGTGGAAGACATGGATGAATGGTTAGGCATTTTCAATGTGAAACTCCGGCACATGAGGGAGGATATTGAATCAATAGAAATCCGCAATAACAAGTTGGAGATGCAATCAGTAAATAACCAAGCTCTCATTGAGGAGCTTGATAAGCTTCTTGAGCGGTTGAGTGTCCCTTCTGAGTATGCATCCTGTCTGACAGGAGGTTCATTTGATGAGGTGCACATGGTTCAAAATGTGGAAGCATGTGAGTGGTTAACAGGTGCCTTGCGTGGTCTTGAAGTGCCTAACATAGATCCGGCTTTTGCAAATATGAGAGCTGTTAAAGAGAAACGTGCAGAACTTGAAAAATTACAGTCTACTTTTGTCAGGAGAGCTTCTGAGTTCTTAAGAAATTACTTTGCTAGTTTGGTGGATTTCATGATTAGTGATAAAAGTTACTTTTCTCAGCGGGGACAGTTGAAGAGGCCTGATCATGCTGATTTGCGGTACAAGTGCAGGACATATGCACGCCTTCTGCAACATTTAAAGAGTCTTGATAAGAACTGCTTGGGTCCATTGAGAAAAGCTTATTGCAGTTCTCTTAACTTGCTTCTTCGAAGAGAGGCCCGTGAGTTTGCAAATGAACTTCGTGCTAGTACTAAAACGTCTAAGAATCCAACTGCTTGGCTTGAAAGCTTCACAGGTTCTGGTCAGAATGTAAATGCTGCTGACACTAATACAGTTTCTGAGGCTTATGCAAAGATGCTCACAATTTTTATCCCACTTCTGGTGGATGAGAGCTCTTTTTTTGCACACTTCATGTGCTTCGAAGTTTCCACATTTGTTCCTCCAGGAGGCGCTGTTAATGGTAATAAAACTGGATATGATGATGACGTTGATGATGATTTGGGGATTATGGACATTGATGAAAATGATAACAAATCTGGTAAAAATTCTGCGGAGCTTTCATCTTTGAATGAATTCCTCCAGGATTTGCTTAATGGAATCCAAGAAGACTTTTATGCTGTTGTGGATTGGGCATACAAGATTGATCCTTTGCGCTGCATATCAATGCATGGAATAACAGAGCGCTATCTCTCCGGTCAGAAAGCTGATGCAGCAGGATTTGTACGCCTTTTGCTTGGTGATCTGGAGTCTCGGATATCCATGCAGTTCAGCCGTTTTGTAGATGAAGCTTGCCATCAGATTGAAAGACATGAGCGCAATGTGCGCCAGATGGGTGTCTTGTCTTACATTCCCAGATTTGCAACCCTTGCAACGCGGATGGAGCAGTACATCCAGGGACAATCTAGGGATTTGGTTGACCAAGCATATACAAAATTTGTTAGCATAATGTTTGTGACTTTAGAAAAAATTGCGCAAACGGATCCGAAGTATGCAGATATTTTTCTTTTAGAGAACTATGCAGCATTTCAAAATAGTTTGTATGACCTTGCCAATGTTGTTCCCACTTTGGCCAAGTTTTACCATCAGGCCAGTGAAGCCTATGAACAAGCTTGCACCCGCCATATTAGCATGATTATATACTATCAATTTGAACGTCTTTTCCAGTTTGCTAAAAGAATTGAGGACCTGATGTTCACTATTGCACCTGAAGAGATTCCTTTCCAGCTTGGTTTGTCAAAAATGGATCTTAGAAAGATGTTAAAATCCAGTTTGTCTGGGGTTGATAAGTCCATTGCTGCGATGTATAAGAAATTGCAGAAGAACTTGACTTCAGAGGAACTGTTACCTTCCTTATGGGATAAATGCAAGAAGGAGTTTCTTGACAAGTACGAAAGTTTTGCCCAGCTCGTCGCCAAGACTTACCCTACGGAGACTATACCATCTGTAGTCGAGATGAGAGACCTTTTAGCTTCCATATGCGTCTTTGCTTGCCTTTGCTTGCCTTTCCCTGGTCATTCTTCCATATCCATAGTAGCATGTGTTACTGGGTTTGGCCCTTATGCTTTTGTATATATTGTTGCTACATTGGTGGGGGAAAATCTTAGAACATATGACATCCAATCAATGAATTGGCTTCCTAAGCTTCCACTCAAGGAATTGGCTCCTTAA 2847 0.431 MAKSSADDAELRRACEAAIEGTKQKIVMSIRVAKSRGIWGKSGMLGRQMAKPRVLALSTKAKGQRTKAFLRVLKYSTGGVLEPAKLYKLKHLSKMEVITNDPSGCTFMLGFDNLRSQSVAPPQWTMRNVDDRNRLLFCILNICKDVLGRLPKVVGIDVVEMALWAKENTPSVSAQKNLQDGGPVASAATETELKVTVEKELVSQAEEEDMEALLGTYVMGIGEAEVFSERLKRELQALEAANVHAILESEPLIDEVLKGLEAATHCVEDMDEWLGIFNVKLRHMREDIESIEIRNNKLEMQSVNNQALIEELDKLLERLSVPSEYASCLTGGSFDEVHMVQNVEACEWLTGALRGLEVPNIDPAFANMRAVKEKRAELEKLQSTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKTSKNPTAWLESFTGSGQNVNAADTNTVSEAYAKMLTIFIPLLVDESSFFAHFMCFEVSTFVPPGGAVNGNKTGYDDDVDDDLGIMDIDENDNKSGKNSAELSSLNEFLQDLLNGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRLLLGDLESRISMQFSRFVDEACHQIERHERNVRQMGVLSYIPRFATLATRMEQYIQGQSRDLVDQAYTKFVSIMFVTLEKIAQTDPKYADIFLLENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFAKRIEDLMFTIAPEEIPFQLGLSKMDLRKMLKSSLSGVDKSIAAMYKKLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVAKTYPTETIPSVVEMRDLLASICVFACLCLPFPGHSSISIVACVTGFGPYAFVYIVATLVGENLRTYDIQSMNWLPKLPLKELAP 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0272 948 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Glsi10g0272 948 Coils Coil 281 318 - -
Glsi10g0272 948 Coils Coil 221 248 - -
Glsi10g0272 948 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Glsi10g0272 948 PANTHER SEC3/SYNTAXIN-RELATED 50 882 - -
Glsi10g0272 948 Pfam Exocyst complex component Sec3 224 493 IPR019160 GO:0000145|GO:0006887
Glsi10g0272 948 Pfam Exocyst complex component Sec3 575 868 IPR019160 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0272 Glsi-ChrGlsi10 1833058 1846770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0272 1 885 EF-hand Containing Proteins AT1G47550 86.839 0.0 1598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0272 10 1833058 1846770 Glsi10g0272 10 1833058 1846770 ECH