Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1356 ATGCCTTCAATGGCTCAAGGAGGAATCAGAAACTTCACCGGAAGTCAGAAGCCCGGTGGCAAGTTCTCCAATGAAAATCGGAATCGTCAGGCTGAATTTTCCGCTCGGAGGCAAAAGATTTTACTGCAAAGAAAGTCTCTTCCGATTGCTTCAGTTGAGAAAAGACTCGTTGAAGAGGTCGGAAAGAATGATATTTTGATTATTGTTGGTGAAACTGGAAGTGGGAAAACCACACAGATTCCCCAGTTTCTGTTTGATGCTGGATTTTGTCATGATGGAAAAGTTATTGGGATAACTCAACCCAGGCGTGTTGCTGCTGTCACTGTGGCGAAACGGGTTGCCGAGGAATGTGGTGTTGAATTGGGCCAAAGGGTTGGATACTCTATTAGATTTGATGATTCTACTTCCAGCTCAACAAAGATTAAATACATGACAGATGGATTGCTTATGAGGGAAGCACTGTTGGATCCATTGCTTTCTAGATATTCTGTTATAATTGTTGATGAAGCCCATGAGAGAACTGTCCACACTGATGTCTTAATGGGCTTGCTTAAAAGTGTACAACATGCTCGGTCCAATTCTGGTGATGTGGGTCAGGGCTTTAATTTTGAAAAAAAGAATGTGAAGAGCAGCATGTCATTGGAGAAAGAAAATGGTGGTCAGTGCAACAGTTTTGTTAGAAAGTACCAAAACAGAAAGTATGCTCCCTTGAAGTTGATCATCATGTCTGCAAGCCTTGATGCACGTGTTTTCTCTGAGTACTTTGGTGGTGCAAAAGCGGTTCATGTCCAAGGGAGACAATTTCCTGTGGATATATTTTATACTCGCCATGCTGAGGCAGATTATTTAGATGCTGCCTTGATAACAATATTCCAGATTCATTTGGAGGAGGGCCCTGGTGATGTACTAGTATTTTTGACTGGGCAAGAAGAGATTGAATCTGTTGAAAGACTAATTAATGAGCGACTCAAGCAATTAGCTGAAGGCAGTCAGAAGCTCCTGACTGTGCCTATATTTGCAGCTCTTCCGTCTGAGCAGCAAATGCGGGTCTTTGCACCAGCTCCATCTGGATTTCGCAAGGTAATATTGGCAACTAATATTGCTGAGACATCAGTAACAATTCCTGGAATCAAGTATGTAATAGATCCTGGATTTGTTAAAGCACGCTCTTATGATCCTGGCAAAGGCATGGAATCTTTAATTGTACTACCTACATCCAAGTCCCAGGCTGTGCAAAGGAGTGGGCGTGCAGGGCGTGAAGGACCTGGAAAATGTTTCCGTCTATATCCAGAAAGTGAATTCGAGAAACTTGAGGACTCAACAAAGCCAGAGATCAAGCGATGCAACCTTTCTAATGTCATTTTGCAGCTTAAAGCTTTGGGTGTTGATGACATATTAGGGTTTGATTTCATTGAGAAACCTTCAAGGGCAGCTATAATCAAATCATTGGAGCAGCTATTCTTGTTAGGTGCTCTAACAGATAACTGTCAATTATGTGATCCAGTTGGACATCAAATGGCTCGGCTTCCCTTGGACCCACTTTATTCCAAAGCTCTTATTTTAGCTAGTCAGTTTAACTGCTTGGAGGAGATGTTGATAACTGTTGCAATGCTTTCTGTAGAATCCATATTTTATGCTCCTCGTGATAAGTTAGAAGAGGCAAGAACTGCAATGAAATGCTTCTCAAGTCCAGAGGGGGACCACCTGACTTTAATTAACGTGTATCGAGCATCTAACGAGTTCATGGAGAAGAGATTGATGGGAATGAGTAATGCAAAAGGTGAAAAGGTTTTGAGAAAATGGTGCAAGGAAAATTTTATTAATAGCCGTTCTCTCAAGCATGCTCGTGACATTCATAGGCAGATTTTGGGGCATGTTGAACAAATGGGTCTTCATATTGCTTCTTGTGGAGATGATATACTTCAATACCGCAGATGCCTTGCAGCTTCCTTTTTCCTCAATGCAGCTGTAAAGCGGCCAGAGGGAACATACAGGGCTTTGGCAAGTGGTGAGGTGGTGCAGATACATCCTTCTTCTGTATTGTTCCGGCAAAAACCAGAGTGCATAATATTTAATGAATTGGTTCAAACCAATAACAAATATGTCCGGAATGTAACCAGAATTGACTACCTATGGTTAACCGAACTGGCTCCTCAATATTATGCTGTGCATAATTAA 2178 0.4187 MPSMAQGGIRNFTGSQKPGGKFSNENRNRQAEFSARRQKILLQRKSLPIASVEKRLVEEVGKNDILIIVGETGSGKTTQIPQFLFDAGFCHDGKVIGITQPRRVAAVTVAKRVAEECGVELGQRVGYSIRFDDSTSSSTKIKYMTDGLLMREALLDPLLSRYSVIIVDEAHERTVHTDVLMGLLKSVQHARSNSGDVGQGFNFEKKNVKSSMSLEKENGGQCNSFVRKYQNRKYAPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDIFYTRHAEADYLDAALITIFQIHLEEGPGDVLVFLTGQEEIESVERLINERLKQLAEGSQKLLTVPIFAALPSEQQMRVFAPAPSGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPGKGMESLIVLPTSKSQAVQRSGRAGREGPGKCFRLYPESEFEKLEDSTKPEIKRCNLSNVILQLKALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDNCQLCDPVGHQMARLPLDPLYSKALILASQFNCLEEMLITVAMLSVESIFYAPRDKLEEARTAMKCFSSPEGDHLTLINVYRASNEFMEKRLMGMSNAKGEKVLRKWCKENFINSRSLKHARDIHRQILGHVEQMGLHIASCGDDILQYRRCLAASFFLNAAVKRPEGTYRALASGEVVQIHPSSVLFRQKPECIIFNELVQTNNKYVRNVTRIDYLWLTELAPQYYAVHN 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1356 725 SMART AAA_5 62 301 IPR003593 GO:0016887
Glsi09g1356 725 CDD SF2_C_RHA 268 429 - -
Glsi09g1356 725 Pfam Helicase conserved C-terminal domain 290 420 IPR001650 -
Glsi09g1356 725 SMART ultradead3 45 273 IPR014001 -
Glsi09g1356 725 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 264 IPR014001 -
Glsi09g1356 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 610 IPR027417 -
Glsi09g1356 725 SMART helicmild6 313 421 IPR001650 -
Glsi09g1356 725 Gene3D - 10 266 IPR027417 -
Glsi09g1356 725 MobiDBLite consensus disorder prediction 1 29 - -
Glsi09g1356 725 CDD DEXHc_DHX33 47 263 - -
Glsi09g1356 725 Pfam Helicase associated domain (HA2) 482 606 IPR007502 GO:0004386
Glsi09g1356 725 Gene3D - 468 637 - -
Glsi09g1356 725 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 287 461 IPR001650 -
Glsi09g1356 725 PANTHER ATP-DEPENDENT RNA HELICASE 34 713 - -
Glsi09g1356 725 SMART ha2_5 481 572 IPR007502 GO:0004386
Glsi09g1356 725 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 267 441 - -
Glsi09g1356 725 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 163 172 IPR002464 -
Glsi09g1356 725 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 644 720 IPR011709 -
Glsi09g1356 725 Gene3D - 267 440 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1356 Glsi-ChrGlsi09 9973156 9979015 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g1356 09 9973156 9979015 Glsi09g1356 09 9973156 9979015 ECH