Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1073 ATGGCAATTTGGCAGCAAAAGCCACTCTTCTCTGCTCTTCTAATCTTCTGCTTAGCAATTGGGGTTTCTTCCCACGACAAGCGCTATACAACTCCAAGTGTCACGCCTCTGACCGATTCTTTTCCTCGTGTCCCGGTTGATCATGAGTTTTCTAAGTCTTTTGGGGCCTCAAATATCCAGTTTCTCAGTAATGGGTCCATGGCCACTTTGGCTCTTGACAAAATTTCAGGATCTGGTTTGGTCTCACAAAGTAGATACTATTATGGATTCTTCAGTGCTGCAATCAAGTTACCAGCTGGTCTGTCATCTGGTGTTGTAGTTGCCTTCTATTTGTCTAATGCAGATAAATTTCCTCACAACCATGATGAGATAGATATTGAACTTCTTGGGCATGATAAGAGAAACGACTGGGTTATTCAAACGAATGTCTATGCCAATGGAAGTGTCAGCACAGGGAGAGAAGAGAAATTCTATCTCTGGTTTGACCCAACACAGCAGCACCACTATTACAGCATCTTATGGAACAATTATCACACAGTGTTCTTAGTGGACAATATTCCAGTGAGGGAGTTTACCCACAGCAATTCATATCCTTCGATTTATCCTTCAAAACCAATGTCAGTGCATGCCACAATATGGGACGGGTCAGAATGGGCAACCCATGGAGGAAAATACCCGGTGAACTATAAGTACGCCCCATTTGTTGTTTCTTTGGCAGAGATGGAACTGAGCGGGTGCATAACCAATCCCACAGCAACAGTTTCTTCATGTGCCAAGACTAGCCCTTCAAGCGTAGACCCAGTTAATGGACCAGAGTTTACTAAGCTATCACCGCAGCAGATAGCAGCCATGGACTGGGCAAGAAGGAAACTCATGTTTTATTCATACTGTAATGACAAACCCAGGTTCAAAGTCCCACCTCCAGAATGCCACTGA 936 0.4412 MAIWQQKPLFSALLIFCLAIGVSSHDKRYTTPSVTPLTDSFPRVPVDHEFSKSFGASNIQFLSNGSMATLALDKISGSGLVSQSRYYYGFFSAAIKLPAGLSSGVVVAFYLSNADKFPHNHDEIDIELLGHDKRNDWVIQTNVYANGSVSTGREEKFYLWFDPTQQHHYYSILWNNYHTVFLVDNIPVREFTHSNSYPSIYPSKPMSVHATIWDGSEWATHGGKYPVNYKYAPFVVSLAEMELSGCITNPTATVSSCAKTSPSSVDPVNGPEFTKLSPQQIAAMDWARRKLMFYSYCNDKPRFKVPPPECH 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1073 311 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 274 310 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Glsi09g1073 311 SUPERFAMILY Concanavalin A-like lectins/glucanases 52 310 IPR013320 -
Glsi09g1073 311 PIRSF EndGlu_transf 13 311 IPR016455 GO:0010411|GO:0016762|GO:0042546
Glsi09g1073 311 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 39 238 IPR000757 GO:0004553|GO:0005975
Glsi09g1073 311 Gene3D - 30 310 - -
Glsi09g1073 311 Pfam Glycosyl hydrolases family 16 49 230 IPR000757 GO:0004553|GO:0005975
Glsi09g1073 311 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 46 310 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1073 Glsi-ChrGlsi09 7486559 7487853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1073 7 311 Glycoside Hydrolase AT1G10550 63.344 5.06e-148 416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g1073 09 7486559 7487853 Glsi09g1073 09 7486559 7487853 ECH