Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1050 ATGAGAGGCTTTAGTTTCGGAGGCTTCACATTTATGCTTGTCATTGCATTTCTTGTATGGTCTTCCAATTTTGAAGCCTGCATTGCAAGAAGAGGCAAGCATTGGAAGCAAAGCAGATCTGTCTCAGCTTCTCTGTTCAAGAAGAAAGGAAAGAATTATGGCAATAGTCACAACCACCATGGTGGAGGATCAACTTCAAAACCAAAGCCTCCATCACACAAAAGCCCTCCATCATCACCGAAGGCTCCACCACATAAAAGCACTCCATCATCACCACCATATCCTAAGCCCAAAAAAAATATCCCATCAACTCCGCCTCCAAAAGCTAACAATGGTGGGCATTCTACCATATTCAATGTCCTAGATTTTGGTGCCAAGGGAGACGGAAGCACTGATGACACCAAGGCATTCCAAGCTGCATGGGCAGCTGCTTGTAAGGTAGAGGCATCAGCCATGCTAATCCCAGCAGATTACGTCTTCTTCGTGGGACCTATTTCATTCTCGGGTCCATACTGCAAACCCAACATAGTTTTTCAGCTTGATGGCACAATTATTGCTCCAACAAACCCCAAGGTTTGGAACAGAGGATTGTTACAATGGCTGGATTTCACAAAGTTGGTAGGAATTACCATTCAGGGAAAGGGTATAATTGACGGAAGAGGTTCAGTCTGGTGGCAAGACCACCCATTTGACAATCCCATAGACGACGAAGAGAAGCTCATAGTCCCGTTAAACAACTCAGTGAGGAGGCCACCAATGCCGATTCAAAGTGAGCTGGGAGGGAAAATGCCGAGCATCAAGCCGACTGCACTAAGGTTCTATGGGAGTTTTAGTCCAACGGTCACAGGCATAACAATTCAAAATAGTCCACAGTGCCACCTGAAATTTGACAATTGCAATGGAGTCCTGGTCCATGATGTGAGCATATCATCTCCTGGTGACAGTCCCAACACAGATGGAATTCATCTTCAGAATTCCAAAGATGTATTGATTCACAGCAGCAATTTAGCTTGTGGAGATGACTGTGTTTCCATACAAACTGGATGCTCAAATGTATATGTGCACAATGTCAACTGCGGTCCAGGGCATGGAATCAGCATTGGAAGTCTAGGGAAGGATAACACGAGAGCCTGTGTCTCAAACATTACTGTCAGAGACGTCATGATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGGGTGGATCAGGCTCTGTGCAGGGGGTACTGTTCTCAAATATACAAGTTTCTGAAGTTCAACTCCCAATTGTGATTGACCAATTCTATTGTGATAAAAGAACATGCACAAACCAAACATCAGCTGTGGCTCTTGCAGGAATCAACTATGAAAGAATAAGGGGGACATACACAGTTAAGCCAGTACACTTTGCCTGTAGTGATAGCCTACCATGTGTAGATGTTTCTTTAACCTCCATTCAGCTAAAACCAATTCAAGAACAATACCACCTGTATGATCCATTCTGCTGGCAGACTTTTGGTGAATTAAGAACTCCTACAGTTCCACCAATTGCTTGTCTAGAGATAGGGAAGCCATCAAGCAATCGGATTCAGATTGATCATGATTTGTGCTGA 1599 0.4409 MRGFSFGGFTFMLVIAFLVWSSNFEACIARRGKHWKQSRSVSASLFKKKGKNYGNSHNHHGGGSTSKPKPPSHKSPPSSPKAPPHKSTPSSPPYPKPKKNIPSTPPPKANNGGHSTIFNVLDFGAKGDGSTDDTKAFQAAWAAACKVEASAMLIPADYVFFVGPISFSGPYCKPNIVFQLDGTIIAPTNPKVWNRGLLQWLDFTKLVGITIQGKGIIDGRGSVWWQDHPFDNPIDDEEKLIVPLNNSVRRPPMPIQSELGGKMPSIKPTALRFYGSFSPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRTCTNQTSAVALAGINYERIRGTYTVKPVHFACSDSLPCVDVSLTSIQLKPIQEQYHLYDPFCWQTFGELRTPTVPPIACLEIGKPSSNRIQIDHDLC 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1050 532 SMART pbh1 379 400 IPR006626 -
Glsi09g1050 532 SMART pbh1 299 325 IPR006626 -
Glsi09g1050 532 SMART pbh1 349 369 IPR006626 -
Glsi09g1050 532 SMART pbh1 326 347 IPR006626 -
Glsi09g1050 532 SMART pbh1 408 429 IPR006626 -
Glsi09g1050 532 MobiDBLite consensus disorder prediction 70 104 - -
Glsi09g1050 532 Gene3D - 104 517 IPR012334 -
Glsi09g1050 532 PANTHER - 116 501 - -
Glsi09g1050 532 MobiDBLite consensus disorder prediction 49 69 - -
Glsi09g1050 532 Pfam Pectate lyase superfamily protein 117 142 IPR024535 -
Glsi09g1050 532 ProSitePatterns Polygalacturonase active site. 356 369 IPR000743 GO:0004650|GO:0005975
Glsi09g1050 532 FunFam polygalacturonase At1g48100 106 517 - -
Glsi09g1050 532 MobiDBLite consensus disorder prediction 49 115 - -
Glsi09g1050 532 Pfam Glycosyl hydrolases family 28 266 484 IPR000743 GO:0004650|GO:0005975
Glsi09g1050 532 Pfam Glycosyl hydrolases family 28 148 228 IPR000743 GO:0004650|GO:0005975
Glsi09g1050 532 SUPERFAMILY Pectin lyase-like 115 525 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1050 Glsi-ChrGlsi09 7322948 7326999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1050 2 532 Glycoside Hydrolase AT1G60590 66.916 0.0 711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g1050 09 7322948 7326999 Glsi09g1050 09 7322948 7326999 ECH