Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0947 ATGGCATTTTGCGGGACTTTCGTTAAGCTAAACCAGTGTCTCCTCCCATGCCACAAAGCTCCAACTCCAAACCATGGTTGCAGAAAACAGTTCTCTGTAAAAGCCTCAGCAACTAACTCAGATGACGGAGAAAGGACGGTTATAAGGAAAACAAAAGATGGGTGGAAGATCAATTACTCAGGCGAGAAACCGGCGACGCCATTGCTGGATACAATCAATTATCCTGTTCATATGAAGAATCTATCCATAGAGGATCTTGAACAACTTGCAGCAGAGCTAAGGGCAGATATTGTATATACTGTATCAAGTACTGGTGGCCATCTTAGCTCAAGCTTAGGAGTGGTGGAGTTAACAGTGGCCCTGCATCATGTTTTCGACACCCCTGAAGACAAAATTATATGGGATGTTGGTCACCAGGCATACCCACACAAGATTCTTACAGGTCGAAGGTCCAGGATGCACACCATTAGGAAAACTTCAGGACTAGCTGGGTTTCCTAAAAGGGATGAGAGCGTTCATGATGCTTTTGGGGCAGGACACAGTTCTACAAGCATATCTGCTGGTCTCGGCATGGCAGTTGCGAGGGATCTATTGGGAAAGAACAACAGCGTCATTTCTGTAATTGGAGATGGGGCAATGACTGCCGGTCAAGCTTACGAGGCCATGAACAACGCAGGATTCCTCGACACTAACATGATAGTTATACTAAATGACAACAGGCAAGTCTCTTTGCCAACTGCCACACTTGACGGCCCTGCAAATCCAGTTGGAGCCCTCAGTAGCGCTTTAAGCAAAATTCAAGCAAGCACCGAATTCCGGAAGCTTAGAGAAGCAGCAAAGAGCATCACAAAACAAATAGGTGGGCAAGCACACCAAGTTGCAGCAAAAGTAGATGAGTATGCAAGGGGTATGATCAGCGCATCCGGGTCTACATTTTTTGAGGAGCTTGGCTTATATTACATCGGCCCTGTAGATGGTCATAACGTCGAAGATCTAGTCAACATTTTTCAAAAAGTGAAAGCAATTCCAGCCCCAGGTCCAGTTTTGATTCACATAGTGACAGAGAAAGGGAAGGGATACCCCCCAGCAGAAGCAGCTGCAGATAAAATGCATGGTGTCGTCAAGTTTGATCCAAAAACAGGTCGCCAGTTCAAGCCAAAATCTTCCACACTTTCATATACCCAATACTTTGTTGAATCTTTGATAAAGGAAGCCGAACTAGACAATAAGATAGTAGCCATTCATGCAGCAATGGGTGGTGGGACAGGTCTAAATTATTTCCAGAAAAGGTTTCCAGACCGCTGCTTTGATGTGGGCATAGCTGAACAACACGCAGTTACATTTGCAGCTGGGTTAGCAGCGGAAGGTCTCAAGCCATTCTGCGCTATCTATTCATCATTCCTGCAACGTGGATATGATCAGGTGGTCCACGATGTAGATCTTCAGAAACTACCGGTCCGCTTTGCTATGGATAGAGCCGGTTTGGTTGGCGCAGATGGACCAACCCATTGTGGAGCATTTGATATCACATACATGGCTTGCTTGCCCAACATGGTGGTCATGGCTCCATCTGATGAAGCTGAACTGATGCACATGGTTGCAACAGCAGCAGCCATAGATGACAGACCAAGCTGCTTTAGATTCCCAAGGGGCAACGGAATTGGAGCCGTTCTGCCCCTCAATAACAAAGGAACCCCACTTGAGATAGGGAAGGGCAGAATACTGGTAGAAGGCACCAGAGTTGCTATTTTGGGATTTGGTTCTATCGTTCAACAATGCCTGCAAGCTGCAGAATTGCTCAAGACAAAAAATGTTTCTGTGACAGTTGCTGATGCTAGGTTTTGCAAACCTCTGGATACTGATCTCATTAAGCTACTAGCAAAGGAGCATGAAGTTCTCATCACAGCAGAAGAAGGTTCTATTGGAGGTTTTGGATCTCATGTGTCACAATTCCTGAGCTTAGCTGGTATCCTGGATGGACATCTGAAGTGGAGATCAATGGTGCTTCCTGACAGATACATTGAGCATGGATCACCTCAAGATCAGACTGAAGAAGCAGGACTGTCATCAAAGCATATTGCTGCAACAGTCTTGTCTCTTCTGGAGAGGCCAAAAGAAGCTTTTCTGTTCAAGTAA 2136 0.4574 MAFCGTFVKLNQCLLPCHKAPTPNHGCRKQFSVKASATNSDDGERTVIRKTKDGWKINYSGEKPATPLLDTINYPVHMKNLSIEDLEQLAAELRADIVYTVSSTGGHLSSSLGVVELTVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESVHDAFGAGHSSTSISAGLGMAVARDLLGKNNSVISVIGDGAMTAGQAYEAMNNAGFLDTNMIVILNDNRQVSLPTATLDGPANPVGALSSALSKIQASTEFRKLREAAKSITKQIGGQAHQVAAKVDEYARGMISASGSTFFEELGLYYIGPVDGHNVEDLVNIFQKVKAIPAPGPVLIHIVTEKGKGYPPAEAAADKMHGVVKFDPKTGRQFKPKSSTLSYTQYFVESLIKEAELDNKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGAVLPLNNKGTPLEIGKGRILVEGTRVAILGFGSIVQQCLQAAELLKTKNVSVTVADARFCKPLDTDLIKLLAKEHEVLITAEEGSIGGFGSHVSQFLSLAGILDGHLKWRSMVLPDRYIEHGSPQDQTEEAGLSSKHIAATVLSLLERPKEAFLFK 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0947 711 Gene3D - 391 557 - -
Glsi09g0947 711 CDD TPP_PYR_DXS_TK_like 397 550 - -
Glsi09g0947 711 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 68 702 IPR005477 GO:0008661|GO:0016114
Glsi09g0947 711 SMART Transket_pyr_3 391 556 IPR005475 -
Glsi09g0947 711 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 30 708 IPR005477 GO:0008661|GO:0016114
Glsi09g0947 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 363 552 IPR029061 -
Glsi09g0947 711 Gene3D - 62 363 - -
Glsi09g0947 711 Pfam Transketolase, pyrimidine binding domain 391 552 IPR005475 -
Glsi09g0947 711 CDD TPP_DXS 105 360 IPR005477 GO:0008661|GO:0016114
Glsi09g0947 711 ProSitePatterns Transketolase signature 2. 497 513 IPR020826 -
Glsi09g0947 711 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 71 701 IPR005477 GO:0008661|GO:0016114
Glsi09g0947 711 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 570 702 - -
Glsi09g0947 711 Pfam Transketolase, C-terminal domain 570 693 IPR033248 -
Glsi09g0947 711 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 69 354 IPR005477 GO:0008661|GO:0016114
Glsi09g0947 711 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 390 558 - -
Glsi09g0947 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 66 422 IPR029061 -
Glsi09g0947 711 Gene3D - 570 702 IPR009014 GO:0003824
Glsi09g0947 711 SUPERFAMILY TK C-terminal domain-like 565 701 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0947 Glsi-ChrGlsi09 6602001 6605234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0947 433 649 Acyl Lipid Metabolism Gene Families AT1G55510 22.026 3.44e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0947 09 6602001 6605234 Glsi09g0947 09 6602001 6605234 ECH