Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0582 ATGCCCACACTTAATCGTTTAACATGCTGGTTTCATTATCCCTATAGATGCGGCAACGCCAGAACCATGAATTTTCCGAATCGTGATGCCCACACCCATAACATGTTCGATCAAATGCTGCGCAGTGATCTTCCGGCGCTTAACTCTTTCATCACCTCGAATGTTCGCCAGGGTGACGCCGTCGCAGCATGGGCCGTCTTTCGTCGTTTGCGTTGCGTTCGTTCCGACATTGACGTTTATACGTTCACCCCCGTTTTGGGTGCATGTTCTATGTTACCTTGCCCTGAGCGTGGCAAACAAGTCCATGCTCTGATGATCAAGACGGGTACTGACTCCGGGACCGTGATCAAAACTGCTCTCATGGGCATGTATTCCAAATATGGGTATTTCGATGAACCGTTAAAGGTCTTTGAAGAGATGGAATACAAGGATGTAGTGACTTGGAATGCTTTGCTTTCGAATTATTTACGGCACAATCATCCTCATGAAGCACTCGGTGTTCTGAAAGCAATGAGCAGGGAGAACGTTGAATTGAGTGAGTTTACATTATGCTCCGTTCTTAAAACTTGTGCTTCTTTGAAGGCTTTTAAGCCGGGAAAGCAAGTTCATGGTTTGGTGGTCTCAGTGGGTCGGGATTTGGTGGTTCTAAGTACAGCACTTATTGACTTTTATTCCAGTGTAGGGTACATCAGCGAAGCTTTGAAAGTGTTCTATACTTTGAACTGCAGAAAAGACGATATGATGCACAACTCGTTGATTTCAGGATGCATCCGGAATCGAAGGTATGGAGAGGCATTCTCCATTATGTGTATGATGAAACCCAATGTTGTTGCGCTCACCAGTGCCCTGGCGGCTTGCTCTGAGAACTCGGATTTGTGGATGGGGAAACAGATACATTGTGTTGCAATACGCCAAGATTTCACTTCTGAGACCCAATTATGCAATGTCCTGTTGGACATGTATGCAAAATGTGGTAAAATTTTGCATGCTCGATTGTTGTTTGATAGAATTAGTCGAAAAGATGTCATTTCCTGGACAAGCATGATTGATGCATATGGGAGCCATGGGCATGGGCACGAAGCCGTTGAGCTGTTTGAGAAAATGAGGGAGGATGGGACCAAGGTATTGCCAAATTTGGTAACTTTTCTTGCCGTTTTATCAGCATGTAGTCACTCTGGACTGATTGAGGAAGGACAAAAATGTTTCAATTTGGTGAGGGAAAAATATGGTCTTGAACCAGGTCCAGAACACTATGCCTGCTTCATAGATATCTTAGGTCGAGCTGGTAGAATGGAAGAAGTATGGTCTGCATATTTCAATATGATTGAGCAGGGTACTCGGCCTACTGCAGGAGTATGGACAGCATTGTTGAATGCTTGCAGTATTAATATGGATGCTGAAAGAGGTGAATTTGCTGCGAAGCATCTCTTGAAGTTGGAACCCAGTAAAGCGAGCAATATTGTTCTTATATCAAATTATTATGCAGCCATTGGAAGGTGGGATTGCGTTGATGAACTGAGAAGCATCATGAGGACAAAAGGGTTGGTCAAGGAAGCTGGGAATAGCTGGATCACTATTCCTGGCTGCAATCATGGTGCCAGCTCAGAACAGCAATTAGAGTTATCATGGAAATTGTCCGCATATCCTTCCAGCATGTGTCATCCGCTACTCCTCATTCGATTATATTATAGGTTAACGGAGAAGACACGAGGTAACCCACCACAGAGGCTCTTATTAATTGTTATGAATTCTGGACTTGGGTGCCGTCGGCTTCACACCAGATCAGTAAGCACTCAGAGGGGGCCTGTGAAGTATGAGAGATTAGCGGAGAAAGCTTCTGGTGGTGTGCCTCTGAATGAAGAGTTGAAGAGGAGCGCAAGTTTGCCTGCACGGGCTTCGACTTTTGTGGACACTCTGCAGAGGAATCCCACAAAGAAGGTTAATATGGAGAAGAGTCACCCACTGTTCAGCTTCTTGGACTTTCGTCGGAAGAAGAAAACTACAGCTAGGCCTGAACTGGCAAGGTATCTCGAGTATGTGAAGGAAGGAGGCATGTGGGACTTTGATTCCAATAAACCTAGCCCCGCTCACCTAAACACAACGACGTCGTCTAACAAGATTACATTACATTATCCTGTGAGTTTGGATAAAAATAGAGCGAAAGTGGAAACTCAAACTGTGGACTGTGGAGCTCCGACTATGGAGCTAGCTTCACACATATCGGCGACTCTTCCCAGAGAAAAGGTCCTGGCTCATACTGTGTTTCATCACACACTATGTCCTGGGTTCACCCCCAGGAGTCTATTCCATCAGATCCCACTTGAATTTTCATTCCAACTTATTAGTTGCATAAATAGGAAACGTCGCTTTGAAGTATTTGCACATAAAAAAGAGCAGATTTGGGTTAGCGAACAAGAGTATATCCGACAAACAGGAGCAGAGGAACCGTCTTCGAGCTCTTCTTTGGAGGATGACTTGTCTTTCTTGTCTCTCAGCGAGAAACCCGACAGGAATATGGCCTTGCTGGATGATTATGAAGCGGAGGAGCTTGATTATGATTCCCACCCTGACCACCGAAGCGGATATGTGGCTTTACTTGGCAAGCCAAATGTTGGCAAGAGTACGCTAGCAAACCAAATGATTGGTCAAAAGTTGTCAATAGTTACACAGAAACCTCAAACAACAAGACACCGAATTCTTGGTATATGTTCTGGCTCAGATTATCAGATAATACTTTATGACACACCTGGTGTGCTTGAGAAGAAAATGCACATGTTGGACTCAATGATGATGAAGAATGTTCGCAGTGCTGTAGTTAATGCTGACTGCATGTTAGTTCTTGTTGATGCATGTAAAGTGCCTGAAAAAATTGATGAATTGTTGGAAGAAGGTGTTGGAGACACCAAAGATAAGCCCCCCACCCTACTGATTCTGAATAAGAAGGATCTAATCAAACCTGGTGAAATTGCAAAGAAGCTTGAGTGGTATCAGAAATTTACTGATGTTGATGAGGTCATACCAGTTAGTGCCAAATACGGTCATGGGGTTGAAGATGTCAAGGACTGGATACTGTCAAAGCTTCCCCATGGACCAGCTTATTATCCAAAGGACATTGTCAGTGAGCACCCAGAAAGATTTTTTGTGGCTGAAATTGTTAGAGAAAAGATCTTTATGCAGTATCGAAATGAAATTCCCTATGCATGTCAGGTGAATGTTGTAAGCTACAAGGCTCGGCCCAATGCAAAAGACTTCATTCAAGTGGAGATTGTTGTTGAGAAAAACTCACAGAAGATTATTCTTATTGGAAGAGAAGGAAAGGCTTTGAAAATTCTTGCAACAGCTGCCCGTCTTGACATTGAAGATTTTTTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTGAGAGAAAATTGGCGGCAAGACGAAGGGCTTCTTAAGCATTACGGTTATGGAGGCCAGATACAAGCTCTATAA 3477 0.4377 MPTLNRLTCWFHYPYRCGNARTMNFPNRDAHTHNMFDQMLRSDLPALNSFITSNVRQGDAVAAWAVFRRLRCVRSDIDVYTFTPVLGACSMLPCPERGKQVHALMIKTGTDSGTVIKTALMGMYSKYGYFDEPLKVFEEMEYKDVVTWNALLSNYLRHNHPHEALGVLKAMSRENVELSEFTLCSVLKTCASLKAFKPGKQVHGLVVSVGRDLVVLSTALIDFYSSVGYISEALKVFYTLNCRKDDMMHNSLISGCIRNRRYGEAFSIMCMMKPNVVALTSALAACSENSDLWMGKQIHCVAIRQDFTSETQLCNVLLDMYAKCGKILHARLLFDRISRKDVISWTSMIDAYGSHGHGHEAVELFEKMREDGTKVLPNLVTFLAVLSACSHSGLIEEGQKCFNLVREKYGLEPGPEHYACFIDILGRAGRMEEVWSAYFNMIEQGTRPTAGVWTALLNACSINMDAERGEFAAKHLLKLEPSKASNIVLISNYYAAIGRWDCVDELRSIMRTKGLVKEAGNSWITIPGCNHGASSEQQLELSWKLSAYPSSMCHPLLLIRLYYRLTEKTRGNPPQRLLLIVMNSGLGCRRLHTRSVSTQRGPVKYERLAEKASGGVPLNEELKRSASLPARASTFVDTLQRNPTKKVNMEKSHPLFSFLDFRRKKKTTARPELARYLEYVKEGGMWDFDSNKPSPAHLNTTTSSNKITLHYPVSLDKNRAKVETQTVDCGAPTMELASHISATLPREKVLAHTVFHHTLCPGFTPRSLFHQIPLEFSFQLISCINRKRRFEVFAHKKEQIWVSEQEYIRQTGAEEPSSSSSLEDDLSFLSLSEKPDRNMALLDDYEAEELDYDSHPDHRSGYVALLGKPNVGKSTLANQMIGQKLSIVTQKPQTTRHRILGICSGSDYQIILYDTPGVLEKKMHMLDSMMMKNVRSAVVNADCMLVLVDACKVPEKIDELLEEGVGDTKDKPPTLLILNKKDLIKPGEIAKKLEWYQKFTDVDEVIPVSAKYGHGVEDVKDWILSKLPHGPAYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVSYKARPNAKDFIQVEIVVEKNSQKIILIGREGKALKILATAARLDIEDFLQKKVYLEIEVKVRENWRQDEGLLKHYGYGGQIQAL 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0582 1158 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 859 1029 IPR030388 GO:0005525
Glsi09g0582 1158 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Glsi09g0582 1158 FunFam GTPase Era 856 1039 - -
Glsi09g0582 1158 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 1036 1151 IPR009019 GO:0003723
Glsi09g0582 1158 NCBIfam GTPase Era 861 1134 IPR005662 GO:0003723|GO:0005525
Glsi09g0582 1158 NCBIfam small GTP-binding protein domain 863 1021 IPR005225 GO:0005525
Glsi09g0582 1158 Hamap GTPase Era [era]. 858 1151 IPR005662 GO:0003723|GO:0005525
Glsi09g0582 1158 FunFam Pentatricopeptide repeat-containing protein mitochondrial 375 524 - -
Glsi09g0582 1158 FunFam Pentatricopeptide repeat-containing protein 43 206 - -
Glsi09g0582 1158 FunFam Pentatricopeptide repeat-containing protein mitochondrial 268 374 - -
Glsi09g0582 1158 Pfam KH domain 1063 1140 IPR004044 GO:0003723
Glsi09g0582 1158 CDD Era 858 1027 IPR030388 GO:0005525
Glsi09g0582 1158 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Glsi09g0582 1158 Pfam 50S ribosome-binding GTPase 863 980 IPR006073 GO:0005525
Glsi09g0582 1158 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Glsi09g0582 1158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 863 1061 IPR027417 -
Glsi09g0582 1158 Gene3D Tetratricopeptide repeat domain 45 215 IPR011990 GO:0005515
Glsi09g0582 1158 Gene3D Tetratricopeptide repeat domain 273 543 IPR011990 GO:0005515
Glsi09g0582 1158 CDD KH-II_Era 1049 1135 - -
Glsi09g0582 1158 FunFam GTPase Era 1040 1154 - -
Glsi09g0582 1158 ProSiteProfiles Type-2 KH domain profile. 1060 1137 IPR004044 GO:0003723
Glsi09g0582 1158 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 529 IPR046960 GO:0003723|GO:0009451
Glsi09g0582 1158 Pfam E motif 465 524 IPR046848 -
Glsi09g0582 1158 Pfam PPR repeat family 340 390 IPR002885 -
Glsi09g0582 1158 Pfam PPR repeat family 143 191 IPR002885 -
Glsi09g0582 1158 Gene3D - 855 1038 IPR027417 -
Glsi09g0582 1158 Gene3D - 1040 1155 IPR015946 -
Glsi09g0582 1158 NCBIfam pentatricopeptide repeat 248 273 IPR002885 -
Glsi09g0582 1158 NCBIfam pentatricopeptide repeat 343 373 IPR002885 -
Glsi09g0582 1158 NCBIfam pentatricopeptide repeat 146 179 IPR002885 -
Glsi09g0582 1158 NCBIfam pentatricopeptide repeat 418 449 IPR002885 -
Glsi09g0582 1158 Pfam PPR repeat 249 273 IPR002885 -
Glsi09g0582 1158 Pfam PPR repeat 418 445 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0582 Glsi-ChrGlsi09 4030490 4041711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0582 27 526 Glycoside Hydrolase AT3G49170 31.703 2.99e-74 262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0582 09 4030490 4041711 Glsi09g0582 09 4030490 4041711 ECH