Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0560 ATGTTCCTTCGTAGACGACCAGCGCAGAATCAGCAGGAGAGTGATCCCACATATCAAGATGCCAAGGTGGCTGAACTCAGGGCTGCTCTTGGGAACCTATCTGGACGTAGTTTAAAGTATTGCACAGATGCATGTCTAAGGAGATATTTAGAAGCACGGAACTGGAATGTTGATAAATCCAAGAAAATGTTAGAAGAAACACTCAATTGGAGGTCAACTTATAAGCCCGAGGAAATCCGTTGGCCTGAAGTGGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCAAACTTTCATGATCGACTTGGGAGGACTGTGCTGATAATGAGGCCGGGGATGCAGAACACAAAATCGCCAGAAAATAATATCCGGCATTTAGTGTACCTAATGGAAAATGCTATCCTTAATCTCCCCGAAGGTCAAGAACAGATGTCATGGTTGATAGACTTCACCGGATTTTCACTCAGCACAAATGTTTCTGTCAAAACAGCCCGTGATATCATTTACATTTTACAAAACCACTACCCAGAAAGGCTTGGTCTTGCTTTCCTGTATAATCCGCCAAGAATATTTCAGGCTTTTTGGAAGGCTGTGAGATACTTCCTAGATCCCAAGACATTCCAGAAGGTGAAATTTGTTTATCCTAAAAACAAGGACAGCGAGGAACTGATGAAATCCCTGTTTGACGTAGAAAATCTTCCTAATGAGTTTGGGGGAAAAGCTACCTTGAAGTATGATCATCAGGAGTTCTCACAATTGATGGCAGAGGATGATATTAAAACTGCTAAGTTCTGGGGAATTGATGACAGGCCCATCCACGCTAAGAATGGGCATCCTGGGGCAGAGGTGGTTCCAGAACCAGTGCCTACTGAACGAGTAAACCTCGGGAACACTCTTCTTGGCGATCGATTTCATCGGAGAGTCATCGTCGACGTCATTAAAGGTGATCGGCCTTCGAGACCTGTTCCTCTATCTATAAAGCCCGTGGAGAAGCAGCAGGAAGTAATACGTAATGTCTTTTCAGTCTTGTGCAGTAGAGCTGAAAATGTAAGCAATTTCGTGGATGCTGAGTCCATCTTTGGTCAGGATGCTCGCCTTGTCTACAAGCACTATGCAACTTTATACTTCGTCTTCATATTTGATAGTTCTGAAAATGAGCTGGCTATGCTTGACTTAATACAAGTCTTTGTTGAAACACTTGACAAATGCTTCAGAAATGTATGTGAGCTTGATGTCGTGTTCAACTATAGCAAGATGCATACTATTCTGGATGAAATTATCTTGGGGGGCCAGGTTTTGGAAACAAATTCAACTGAGGTTATGAAGGCTGTTGAAGAAATATCAAAGCTAGAAGCGGCCTCCAGTGCTATCAACCTTGTCCCAAAATCTGTTTCTGGTTGGAGGACGCGGTAG 1413 0.436 MFLRRRPAQNQQESDPTYQDAKVAELRAALGNLSGRSLKYCTDACLRRYLEARNWNVDKSKKMLEETLNWRSTYKPEEIRWPEVAHEGETGKVSRANFHDRLGRTVLIMRPGMQNTKSPENNIRHLVYLMENAILNLPEGQEQMSWLIDFTGFSLSTNVSVKTARDIIYILQNHYPERLGLAFLYNPPRIFQAFWKAVRYFLDPKTFQKVKFVYPKNKDSEELMKSLFDVENLPNEFGGKATLKYDHQEFSQLMAEDDIKTAKFWGIDDRPIHAKNGHPGAEVVPEPVPTERVNLGNTLLGDRFHRRVIVDVIKGDRPSRPVPLSIKPVEKQQEVIRNVFSVLCSRAENVSNFVDAESIFGQDARLVYKHYATLYFVFIFDSSENELAMLDLIQVFVETLDKCFRNVCELDVVFNYSKMHTILDEIILGGQVLETNSTEVMKAVEEISKLEAASSAINLVPKSVSGWRTR 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0560 470 Gene3D - 4 268 IPR036865 -
Glsi09g0560 470 CDD SEC14 99 240 IPR001251 -
Glsi09g0560 470 SMART sec14_4 87 242 IPR001251 -
Glsi09g0560 470 Pfam Clathrin adaptor complex small chain 330 450 IPR022775 -
Glsi09g0560 470 ProSitePatterns Clathrin adaptor complexes small chain signature. 366 376 IPR000804 GO:0006886|GO:0016192|GO:0030117
Glsi09g0560 470 SUPERFAMILY SNARE-like 329 449 IPR011012 -
Glsi09g0560 470 PANTHER GH16843P 10 270 - -
Glsi09g0560 470 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Glsi09g0560 470 SUPERFAMILY CRAL/TRIO domain 81 254 IPR036865 -
Glsi09g0560 470 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Glsi09g0560 470 FunFam Phosphatidylinositol transfer protein 3 3 274 - -
Glsi09g0560 470 Pfam CRAL/TRIO, N-terminal domain 41 66 IPR011074 -
Glsi09g0560 470 Gene3D - 322 462 - -
Glsi09g0560 470 Pfam CRAL/TRIO domain 98 239 IPR001251 -
Glsi09g0560 470 SUPERFAMILY CRAL/TRIO N-terminal domain 7 82 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0560 Glsi-ChrGlsi09 3893066 3899959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0560 46 235 Acyl Lipid Metabolism Gene Families AT1G55840 26.699 6.98e-11 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0560 09 3893066 3899959 Glsi09g0560 09 3893066 3899959 ECH