Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0254 ATGCCATCTTCAGTAATTCATATATCTGCTCCCTCCATCTTCAACTCAAACAGAAATACCGAAATGGCTTTAACACTTGGTTCTTCAAATACCTTGTTTACTCAGAAAGAAACCAAAGTCACCAAAACTCGTGATGACATCTCTTCTACAGTTTGCTTTGCGAAGATTAAGCCATCTTTCCGTCTCAGCGCAAAGAATTCGATGCAAGGCTACAACTTGAGCTCAGAAGCAATGAGAAACGAGAAATGGGAGAAGCTCCATAGGGCGTCGGTTCCGCATAATATTAATGAGGATGATTCCTTGAGAGTGCCTGTGTTTGTGATGTTGCCATTAGACACAGTAACAGCGGGAGGGAATTTGAATAAGCCACGAGCAATGAATGCTAGTTTGATGGCCCTCAAGAGTGCAGGAGTTGAAGGAGTAATGGTGGATGCTTGGTGGGGCTTGGTAGAGAAAGATGGGCCTTTGAAGTACAACTGGGAAGCCTATGCCGAGCTTGTGCACATGGTACAAAAGCAAGGGTTGAAGCTTCAAGTTGTTATGTCATTCCATCAGTGTGGAGGAAATGTTGGAGACTCCTGCGGTATTCCTCTGCCTCCATGGGTGCTTGAAGAAATCAGCAAGAACCCTGACCTGGTTTACACAGACAGATCGGGGAGGAGGAATCCGGAATACATCTCCTTGGGCTGTGATTCAATGCCTGTTCTAAGAGGAAGGACGCCTCTGCAGGTATACTCTGATTACATGAGGAGTTTCCGTGAGAGATTCACAGATTACTTGGGCAGTGTTATCGTGGAAATTCAGGTGGGGATGGGTCCTTGTGGGGAGCTGAGATATCCATCTTATCCAGAAAGCAACGGAACTTGGAGGTTTCCTGGAATTGGAGAATTCCAGTGCTACGACAAGTATATGAGAGCGTCCTTGGAAGCATCGGCAGAGGCCATTGGAAGGAAAGAATGGGGAAGAAGTGGGCCCCATGACTCCGGGCAATACAATCAATTTCCAGAGGATACTGGATTTTTCACCAGGGAAGGAACATGGAACTCTGAATATGGACACTTCTTCCTGGACTGGTACTCCAGTAAACTGCTGGAACACGGTGATAGAATCCTTGAATCTGCAAAAGGAATATTCAAAACATGTGGGGTGAAACTATCTGGGAAAATTGCTGGAATCCATTGGCATTACAAATCGAGGTCCCACGCAGCCGAATTAACTGCAGGGTACTATAATACTCGATTTCGTGATGGTTATCTGCCAATAGCACGAATGCTGGCAAAACATGGAGCCTTCTTCAATTTCACCTGCATGGAAATGAAAGACGTAGAGCAGCCTCAACATGCGAATTGCTCCCCCGAAGGGTTAGTTCGTCAAGTAAAGATGGCAACCAGGACGGCTAGAGTACAACTTGCTGGGGAAAACGCATTGGAGAGATATGATGCAGATGCATATGCTCAAGTTTTATCAACAAGTACATCAGACTTGGGCAATGGATTCACTGCATTTACGTATCTTAGAATGAACAAGAAGCTGTTTGAAGGTGATAATTGGCGGCATCTTGTGGGATTTGTAAGAACCATGTCTGAAGGTGGTCGGAGACAAAGACTTCCGGACTACGACTCCTGTGGGTCTGATCTTTACGTTGGACACATCGAAGGAACTCGCGAGAACCAACTTCAAGAGGTTGCTCTTGCGTGA 1698 0.4582 MPSSVIHISAPSIFNSNRNTEMALTLGSSNTLFTQKETKVTKTRDDISSTVCFAKIKPSFRLSAKNSMQGYNLSSEAMRNEKWEKLHRASVPHNINEDDSLRVPVFVMLPLDTVTAGGNLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEAYAELVHMVQKQGLKLQVVMSFHQCGGNVGDSCGIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDSMPVLRGRTPLQVYSDYMRSFRERFTDYLGSVIVEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGRKEWGRSGPHDSGQYNQFPEDTGFFTREGTWNSEYGHFFLDWYSSKLLEHGDRILESAKGIFKTCGVKLSGKIAGIHWHYKSRSHAAELTAGYYNTRFRDGYLPIARMLAKHGAFFNFTCMEMKDVEQPQHANCSPEGLVRQVKMATRTARVQLAGENALERYDADAYAQVLSTSTSDLGNGFTAFTYLRMNKKLFEGDNWRHLVGFVRTMSEGGRRQRLPDYDSCGSDLYVGHIEGTRENQLQEVALA 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0254 565 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 137 151 IPR001554 GO:0000272|GO:0016161
Glsi09g0254 565 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 272 294 IPR001554 GO:0000272|GO:0016161
Glsi09g0254 565 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 347 366 IPR001554 GO:0000272|GO:0016161
Glsi09g0254 565 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 383 399 IPR001554 GO:0000272|GO:0016161
Glsi09g0254 565 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 418 441 IPR001554 GO:0000272|GO:0016161
Glsi09g0254 565 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 158 176 IPR001554 GO:0000272|GO:0016161
Glsi09g0254 565 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 400 411 IPR001554 GO:0000272|GO:0016161
Glsi09g0254 565 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 455 477 IPR001554 GO:0000272|GO:0016161
Glsi09g0254 565 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 180 201 IPR001554 GO:0000272|GO:0016161
Glsi09g0254 565 Pfam Glycosyl hydrolase family 14 106 523 IPR001554 GO:0000272|GO:0016161
Glsi09g0254 565 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 64 532 IPR001554 GO:0000272|GO:0016161
Glsi09g0254 565 Gene3D Glycosidases 96 554 - -
Glsi09g0254 565 SUPERFAMILY (Trans)glycosidases 102 530 IPR017853 -
Glsi09g0254 565 ProSitePatterns Beta-amylase active site 1. 184 192 IPR018238 GO:0000272|GO:0016161
Glsi09g0254 565 PRINTS Plant beta-amylase signature 262 271 IPR001371 GO:0000272|GO:0016161
Glsi09g0254 565 PRINTS Plant beta-amylase signature 503 517 IPR001371 GO:0000272|GO:0016161
Glsi09g0254 565 PRINTS Plant beta-amylase signature 421 431 IPR001371 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0254 Glsi-ChrGlsi09 1810288 1812394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0254 22 565 Glycoside Hydrolase AT4G17090 70.417 0.0 830
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0254 09 1810288 1812394 Glsi09g0254 09 1810288 1812394 ECH