Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2075 ATGGCCTTCATCAAATCCAGGTTACGCCCGTACCACTCTCTCACTCCCACGTTCAAGCTATACTCCTCTTCTTCTGCTGTAGTTCCAGAAGCCACTCTTCAGCTGGACACGGAGGAGGATACGGAAACTTCCCATAACACTAATTTATCTCCTGACCAAACCCATTTAGCCTCCAAATTTCACGCTTTAATCAAAGACCACTACCGCAAAAACCCTAACCCTAACGCCATCCCACCGACCCCTAATTTTACCATACCCGATCTCTCCCACGATTTTTCTAGACTTTCCGACATCCATGCAGTTTCCCCCTCTATCGTCCGCCTCGTGCTTGAGAAATGCGGTGCCGTCCGCCACGGTATCCCTTTCCTCCAATCCCTGGCTTTCTTCAACTGGGCCACCTCGACAGAGGGGTTTCCCAGCTCCCCCGAGCCCTATATTGAGATGGTTGACCTCGCGGGAAAGCTGAGGCAATTCGATTTAGCCTGGCATTTGATTGATTTGATGAAAGCCCGGCGTGTCGAAATAAGGGTTGAGACATTCTCCGTTCTCGTCCGGCGGTACGTGAGAGCTGGATTGGCTGCGGAGGCAGTGCACACATTTAATCGTATGGAAGACTATGGTTGCACACCTGACAAGATTGCATTTTCAATTGTCATTAGTATTCTGTGCAAGAAGAGAAGGGCAAGTGAAGCTCAGTCTTTTTTTGATAGTTTGAAGCATAAGTTTGAGCCGGATGTCGTGGTGTATACCAGCTTAATTCATGGTTGGTGCCGAGCAGGAAATATTTCAGAGGCCGAACGGGTATTTGGGGAAATGAAAATGGCTGGCATCAAGCCTAATGTTCATACTTACAGCATTGTGATTGATTCACTATGTCGGTGCGGACAAATTACTCGTGCGCATGATGTTTTCTCAGAGATGATAGATGTGGGTTGTGATCCTAATTCCATTACTTTCAATAATCTGATGCGGGTTCATGTGAAGGCTGGAAGGACTGAGAAGGTATTGCAAGTTTACAATCAGATGAAGAGACTTGGATGTCCTGCTGATACCATAACCTATAATTTCCTAATTGAGAGCCATTGTAGAGATGATAATCTTGAAGAAGCTGTCAAGGTTCTCAATTCAATGGTTAAGAAAGGGTGTGCTCCTAATGGGTCTACTTTCAATCTTATATTTAGATGCATAGCAAAGTTACATGATATCAATGGTGCTCATCGGATGTATGCAAAAATGAAGGAACTCAAGTGTCAGCCTAATACGTTGACTTACAATATATTAATGACTATGTTTGCTAATGCAAAATCTACTGATATGGTTCTCAAAATGAAGAGGGAAATGGATGAGGATGAAATTGAACCCAATGTGAATACTTACCGAGTTTTGATCTCAATGTATTGTGGAATGGGGCACTGGAATAATGCCTACAAGTTACTGAGGGAGATGGTTGAAGAAAAATGCTTAAAACCAAATCGATTAGTTTATCAGACGGTTCTGGATCAGCTGAGGAAAGCGGGACAGTTAAAGAAGCATGAAGAGTTGGTGGATAAGATGGTTGACAGGGGATTTGCCTCTCGCCCTTTATAG 1587 0.4417 MAFIKSRLRPYHSLTPTFKLYSSSSAVVPEATLQLDTEEDTETSHNTNLSPDQTHLASKFHALIKDHYRKNPNPNAIPPTPNFTIPDLSHDFSRLSDIHAVSPSIVRLVLEKCGAVRHGIPFLQSLAFFNWATSTEGFPSSPEPYIEMVDLAGKLRQFDLAWHLIDLMKARRVEIRVETFSVLVRRYVRAGLAAEAVHTFNRMEDYGCTPDKIAFSIVISILCKKRRASEAQSFFDSLKHKFEPDVVVYTSLIHGWCRAGNISEAERVFGEMKMAGIKPNVHTYSIVIDSLCRCGQITRAHDVFSEMIDVGCDPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPADTITYNFLIESHCRDDNLEEAVKVLNSMVKKGCAPNGSTFNLIFRCIAKLHDINGAHRMYAKMKELKCQPNTLTYNILMTMFANAKSTDMVLKMKREMDEDEIEPNVNTYRVLISMYCGMGHWNNAYKLLREMVEEKCLKPNRLVYQTVLDQLRKAGQLKKHEELVDKMVDRGFASRPL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2075 528 Gene3D Tetratricopeptide repeat domain 447 521 IPR011990 GO:0005515
Glsi08g2075 528 Gene3D Tetratricopeptide repeat domain 108 225 IPR011990 GO:0005515
Glsi08g2075 528 Gene3D Tetratricopeptide repeat domain 226 329 IPR011990 GO:0005515
Glsi08g2075 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Glsi08g2075 528 Pfam PPR repeat 317 347 IPR002885 -
Glsi08g2075 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Glsi08g2075 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Glsi08g2075 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Glsi08g2075 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Glsi08g2075 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Glsi08g2075 528 SUPERFAMILY TPR-like 210 484 IPR011990 GO:0005515
Glsi08g2075 528 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 74 395 - -
Glsi08g2075 528 Pfam PPR repeat family 350 397 IPR002885 -
Glsi08g2075 528 Pfam PPR repeat family 178 224 IPR002885 -
Glsi08g2075 528 Pfam PPR repeat family 454 502 IPR002885 -
Glsi08g2075 528 Pfam PPR repeat family 244 293 IPR002885 -
Glsi08g2075 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Glsi08g2075 528 NCBIfam pentatricopeptide repeat 179 211 IPR002885 -
Glsi08g2075 528 NCBIfam pentatricopeptide repeat 458 490 IPR002885 -
Glsi08g2075 528 NCBIfam pentatricopeptide repeat 423 456 IPR002885 -
Glsi08g2075 528 NCBIfam pentatricopeptide repeat 317 350 IPR002885 -
Glsi08g2075 528 NCBIfam pentatricopeptide repeat 247 281 IPR002885 -
Glsi08g2075 528 NCBIfam pentatricopeptide repeat 352 385 IPR002885 -
Glsi08g2075 528 NCBIfam pentatricopeptide repeat 282 315 IPR002885 -
Glsi08g2075 528 NCBIfam pentatricopeptide repeat 388 421 IPR002885 -
Glsi08g2075 528 Gene3D Tetratricopeptide repeat domain 330 446 IPR011990 GO:0005515
Glsi08g2075 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Glsi08g2075 528 Pfam Pentatricopeptide repeat domain 404 433 IPR002885 -
Glsi08g2075 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2075 Glsi-ChrGlsi08 14544641 14546227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2075 136 527 Glycosyltransferase AT1G05670 24.569 7.64e-40 152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g2075 08 14544641 14546227 Glsi08g2075 08 14544641 14546227 ECH