Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2072 ATGCTCCCGCTTCACTCTTATACAGGTTGCTGTGCTTCCACAGCAAAAGCATTTCGAAACTCACCTTCTCTCTTCTCCCTCTCCGCTGGGGGTCGGAACCATAAGTTGCCTCTTAGCTTTGCTAGAATAATTAGATGCAGTTCTGGTTTCGCCCGAGACTCAGACTCCGAAGGAGAGCAAGAACTGGTCGCCGCTAAGAGGACGAATTACGCCGGCGTTCGGTTGGAGGAGACTGTCGATATCAGGTCAGGAAAACTTAGACTCGATACTTGGATCTCTTCTCGCATCAGCGGCGTAAGTAGGGCTCGCGTGCAGTCTAGTATTAGAGCGGGGCTCGTTCTTGTCAATGGCCGTGTTGTTGATAAGGTTTCTTTCAACGTCAAGGCTGGGGATAAGATCAATTGCACGATCTCGGGGTTGCAGCAGTTGAGGGCCGAGCCAGAAAATATGCCGTTGGATATAGTTTATGAAGACGAGCATGTACTAGTTATTAATAAACCTGCACACATGGTTGTGCATCCAGCACCTGGAAATGCATCTGGCACACTTGTCAATGGCATTCTTCACCATTGTAGCCTTCCGAATGTTGAAATTTCTAATAAGGAAGCTCTTTCTGAGACTGAAGATTCTGATGATGATATCCATAGCTTCTGTATACATCCAAGTTCTAATGAAGGGCCACAATTACATTCCAGCATGCGTGGAGCATCAGTCCGCCCAGGGATTGTGCACAGGTTGGACAAAGGCACCAGTGGATTACTCGTTGTAGCAAAGGATGAACATTCTCATGGCCATTTATCAGAACAATTCAAGCTACGTACTATAAAGAGGGTGTATGTTAGTCTCAGTGCTGGGGTACCCACTCCAATTGTTGGGCGTGTTGAGGTTCCAGTTGGTCGTGATCTTAATAACCGTATTCGAATGACTGCTGTGGTTGGATCAGTTAATTCTAGAAAGGCCCGTTATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCCGAGGGTGCTTGTGCATTGCTTGAGTGGAAGTTAGAAACTGGACGCACTCATCAGATTCGTGCTCACGCAAAGTATCTGGGAGTTCCTCTGCTGGGTGATGAGGTGTACGGAGGGACGAAGAGCATGGTCTTATCACTGCTTCAGCCCAGAACGCCCCCAAGCTTGCGTGGCAGCATCTTAGAAATGGTTTCTAGGCTAGATAGGCCTTGCCTTCATGCTTTAACTCTCGGGTTTCAGCATCCCCATACAGAAGAGCAGGTGCACTTTTCTTGCCAACCTCCTACGGACTTCGATGAGATTTTGAGCCTGCTTCGTAGAATTGGCAGTGAGAGGTTATCTTCCTCTGAGTATTCAATTTTATGA 1365 0.4733 MLPLHSYTGCCASTAKAFRNSPSLFSLSAGGRNHKLPLSFARIIRCSSGFARDSDSEGEQELVAAKRTNYAGVRLEETVDIRSGKLRLDTWISSRISGVSRARVQSSIRAGLVLVNGRVVDKVSFNVKAGDKINCTISGLQQLRAEPENMPLDIVYEDEHVLVINKPAHMVVHPAPGNASGTLVNGILHHCSLPNVEISNKEALSETEDSDDDIHSFCIHPSSNEGPQLHSSMRGASVRPGIVHRLDKGTSGLLVVAKDEHSHGHLSEQFKLRTIKRVYVSLSAGVPTPIVGRVEVPVGRDLNNRIRMTAVVGSVNSRKARYAASRYKVIEILAEGACALLEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLQPRTPPSLRGSILEMVSRLDRPCLHALTLGFQHPHTEEQVHFSCQPPTDFDEILSLLRRIGSERLSSSEYSIL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2072 454 ProSiteProfiles S4 RNA-binding domain profile. 86 159 - -
Glsi08g2072 454 CDD PseudoU_synth_RluA_like 161 412 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Glsi08g2072 454 ProSitePatterns Rlu family of pseudouridine synthase signature. 243 257 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Glsi08g2072 454 Gene3D Pseudouridine synthase 142 427 - -
Glsi08g2072 454 Pfam S4 domain 87 133 IPR002942 GO:0003723
Glsi08g2072 454 SUPERFAMILY Pseudouridine synthase 146 439 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Glsi08g2072 454 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 91 436 - -
Glsi08g2072 454 SMART s4_6 86 144 IPR002942 GO:0003723
Glsi08g2072 454 Pfam RNA pseudouridylate synthase 160 357 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Glsi08g2072 454 SUPERFAMILY Alpha-L RNA-binding motif 86 177 - -
Glsi08g2072 454 CDD S4 87 165 - -
Glsi08g2072 454 Gene3D - 71 139 IPR036986 GO:0003723
Glsi08g2072 454 FunFam RNA pseudouridine synthase 2 chloroplastic 73 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2072 Glsi-ChrGlsi08 14535362 14539620 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g2072 08 14535362 14539620 Glsi08g2072 08 14535362 14539620 ECH