Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2057 ATGCAACAAGGAGATTACAACTCCGCTCCATATTATCAATTCCCTCATCTGCAAAACCCAAATCCCAACCCTAACCCTAATCCTGCCGAGTACGCCTCCGCCCCTCCGTTCACCTCTGCTTACGCCCCTTCTGATTACACTGCTTACGCCTCACCTTATCCTCCTTACCCTCAAAACCCCGATTCTATATCTGCTCCTTCCTACCCTCCTACCTCCAATCCAAATTTGCACTCTTTCAGTTCTCCTCCTCAACCCTCCTCCTTTCCTTCCTTTGAATCCCATATTCCCTACCAACCACCGCCACAGCAACAATGTCATCATCCGCCCTATGATCAGCATCAAACGGCTCCAAATTATGCCCCTTCTTCTTCCGCTATTCCTCCAAACCCCAGCCCCAATTCTCCATACCCGTCCTTGTATCAGGCTTCGTACAGTCATCCAGGATCTTCTATTCCTCCTGCCTATGAAAGCCCTTATGACAATCCCGTGAAATTTGATTATGGTAGTGCTTATTTCGATGACAAATATGGAAGTTTTAATCGGAGCCGGTCCGATTTGGGGTCGGATTTGTATGGAAAGCGTCAGGATAGCGGGCTTTCGAGGTATGATCCTGGTCGTGATGAGGTTTACGGAGATGGTGTGTATGCCTATGAAGGGGGCAAAGTGGAACCATATGGAGCACGGGGTACGGCTCCTAAGTCGTCAACTTGGTCCGGATTTGATGATTATGGAAGGTCAATTAGTTTTCCCTCTCCGAAAGAGTCCTCTCCGACGAGCAAGGTTGTGAAAGCAGTGCCGAAGGCTGATGCCCAAGAGGATGCGAAAAGCGGGGTGCAAAAATTTCGTGTCAAACTGTTGGCAGAAAGTGGTGGTCAGAGCACTATGGATGTTCTTTGTCAGATTGCTTTAGATGGAGTTCGTATGCTGGATCCAAGTACCATTCGGACATTGAGAATTTATCCTCTTGAGAACATTACAAGATGTGAAAGATTCGATTCATCTACCTTTGCTTTTTGGTCCAAGAGCCCTGTGGACATAGAGCCAAGACGAATCAGATTGCAATCCAATAGTTACACTACCAACACACTTTTGGATACAGTGACTGCTGCAACCATACAGTTCAAGGAAATGGGTGGAAGTAGGAGGTCTGCTGAATCGTTGAAAACAAATGAACAGCCTACAGAAAAGAAGAAAGGCCTTGCTGATTGGATGAATTTGGTTAAACCTGCCAATGAAGAGAAGGATCATTGGGTCCCAGATGAAGCAGTTTCAAAATGTACAGCATGCGGCACTGATTTTGGGGCTTTTGTTCGTAAGCATCACTGTAGGAACTGTGGGGATATTTTCTGTGATAAATGTACACACGGTAGAATTGCTCTAACTGCTGATGAGAATGCTCAGCCAGTACGAGTTTGTGACCGATGCATGACTGAAGTGACTCAGAGGCTCAGTAATGCTAAAGAGGTCGCAAGCAGACCTGTGCTGCAAAGTCACGAGGATCTTGCCAGGAAACTTCAGGATGAGCTAGAGAGGAATCGGAAGACCTCAGGTTCCAAGTCTGATGGATCTGGAAGACGGATGAAGGAAGTTGCATGTCCTACTTGCACTGTCCATCTGCAGGTCCAAGTACCTAGCTCAGGTTCGGAGACGATCGAGTGTGGTGTTTGCCAGCACCCATTTCTTGTGAGTGCTCACTGA 1698 0.4717 MQQGDYNSAPYYQFPHLQNPNPNPNPNPAEYASAPPFTSAYAPSDYTAYASPYPPYPQNPDSISAPSYPPTSNPNLHSFSSPPQPSSFPSFESHIPYQPPPQQQCHHPPYDQHQTAPNYAPSSSAIPPNPSPNSPYPSLYQASYSHPGSSIPPAYESPYDNPVKFDYGSAYFDDKYGSFNRSRSDLGSDLYGKRQDSGLSRYDPGRDEVYGDGVYAYEGGKVEPYGARGTAPKSSTWSGFDDYGRSISFPSPKESSPTSKVVKAVPKADAQEDAKSGVQKFRVKLLAESGGQSTMDVLCQIALDGVRMLDPSTIRTLRIYPLENITRCERFDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQFKEMGGSRRSAESLKTNEQPTEKKKGLADWMNLVKPANEEKDHWVPDEAVSKCTACGTDFGAFVRKHHCRNCGDIFCDKCTHGRIALTADENAQPVRVCDRCMTEVTQRLSNAKEVASRPVLQSHEDLARKLQDELERNRKTSGSKSDGSGRRMKEVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2057 565 FunFam Zinc finger, FYVE-type, endofin 407 485 - -
Glsi08g2057 565 Coils Coil 495 515 - -
Glsi08g2057 565 MobiDBLite consensus disorder prediction 17 31 - -
Glsi08g2057 565 MobiDBLite consensus disorder prediction 107 122 - -
Glsi08g2057 565 MobiDBLite consensus disorder prediction 1 145 - -
Glsi08g2057 565 MobiDBLite consensus disorder prediction 507 526 - -
Glsi08g2057 565 SUPERFAMILY FYVE/PHD zinc finger 415 487 IPR011011 -
Glsi08g2057 565 SMART fyve_4 412 481 IPR000306 GO:0046872
Glsi08g2057 565 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 420 480 IPR017455 -
Glsi08g2057 565 MobiDBLite consensus disorder prediction 65 100 - -
Glsi08g2057 565 Pfam FYVE zinc finger 416 480 IPR000306 GO:0046872
Glsi08g2057 565 MobiDBLite consensus disorder prediction 1 16 - -
Glsi08g2057 565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 485 IPR013083 -
Glsi08g2057 565 PANTHER PROTEIN FREE1 1 565 IPR045893 GO:0036258|GO:0043130
Glsi08g2057 565 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2057 Glsi-ChrGlsi08 14413959 14418020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2057 408 493 EF-hand Containing Proteins AT3G14270 34.021 4.16e-13 70.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g2057 08 14413959 14418020 Glsi08g2057 08 14413959 14418020 ECH