Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1838 ATGATCTCAATCACTTCTGCTGAACTGAACTACCTAGTCTTCCGTTACCTTCACGAATCAGGTTTTACTCATTCAGCATTTGCTTTCGGGTATGAGGCAGGGATTGATAAAAGTGGAATTGATGGAAATTCAGTTCCACCTGGTGCTCTTGTGACATTCATCCAGAAAGGAATTCAATATATTGAACTGGAGGCAAACTTGAGCGGTAGTGATGAAGATACAGATGAGGATTTCTCATTTCTACAACCTCTTGACCTTATAACAAAGGACCCATATGAAATACACAATATTGTAAAAGCCCAAAAGGAGAATCTACGTCAACATAAGTTTGAAGCAAATAAAAAGGTGAATGATTTGAGTCAGGACACTGCAAGGGAACATGCTCAGGAAATGGACAAAGAAACAAAGGAAAAGGAAAATGGAAATGAAATGGACAAAACAAAGCTAGAGAAAGAAAAGGAGCAAGAGAAGGGTGATTATAAAGAAATACAACATCCAGATCAAAATGATGCAGAGAAGCACGAAGATAAGATTGTAGTTGAAAATAAAGAAAACGGAACATGTGGAGGGCCTGAGCCAATGGAGATCTCCCAAAGCAGCATGTCATTGCCTAGTGAGATTCCAACTTCTGATGTAAAAATCTTGGAAGGCCATACCTCTGAGGTTTTTGCTTGTGCATGGAATCCATCAGGTTCACTTCTTGCATCTGGATCTGGAGATTCAACAGCCCAGATTTGGAAAATTGCTGAAGGACCTTTTAACACTAATGTACAAAATGAAACAATGAATGTTGTGGTGCTGAATCACTTCAAAGGAAGAACCAACGAGAAAAGCAAAGATGTGACAACACTTGACTGGAATGGAGATGGGACATTACTGGCAACTGGTTCTTATGATGGGCAAGCAAGAATATGGAGTAGAGATGGAGAGTTGAGGAGTACGTTAAACAAGCATAAAGGTCCAATCTTTTCTTTGAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGCAGCGTAGATAAAACTGCTATTGTCTGGGACATAAAGACTGGAGAATGGAAACAACAATTTGAATTTCACTCTGGTATATTGCATTTTGAAATTCTTGTTTTCCTCTATGGCTGTCTTTGTGATAATAACTATTCCCAAACTGTTTCAGCTCCGACTCTTGATGTAGATTGGCAAAACAATGTGTCATTTGCAACATGCTCCACTGATCATATGATATATGTATGCAAAATTGGAGAGAATCACCCAATTAAAACTTTCTCAGGGCATCAGGGTGAAGTTAATGCCATTAAATGGGATCCAACAGGCTCTTTTCTGGCTTCTTGCTCCGATGATCACACTGCTAAAATATGGAGTCTGAATCAGGACAAGTATTTGCATGATTTGAAGGAACATGTTAAGGAGATATATACCATTCGGTGGAGTCCTACAGGGCCCTGTACCAACAATCCCAATCAGCCATTAGTGCTGGCAAGTGCCTCCTTCGACTCTTCAGTAAAGCTGTGGGATGTGGAACTAGGGAAAGTACTCTACAGCCTAAATGGTCACAGGGATCCTGTATATTCCGTTGCATTCAGCCCTAATGGTGAGTATTTGGCAAGTGGCTCCATGGATAAATGCATGCATATATGGTCTGTGAAGGAGGGCAAAATTGTGAAAACGTACACTGGAAATGGTGGGATCTTTGAAGTTGGTTGGAATAAAGACGGCGATAAAGTTGCCGCTTGTTTTTCAAACAACATTGTTTGTGTATTGGATTTCCGAATGTAG 1779 0.4019 MISITSAELNYLVFRYLHESGFTHSAFAFGYEAGIDKSGIDGNSVPPGALVTFIQKGIQYIELEANLSGSDEDTDEDFSFLQPLDLITKDPYEIHNIVKAQKENLRQHKFEANKKVNDLSQDTAREHAQEMDKETKEKENGNEMDKTKLEKEKEQEKGDYKEIQHPDQNDAEKHEDKIVVENKENGTCGGPEPMEISQSSMSLPSEIPTSDVKILEGHTSEVFACAWNPSGSLLASGSGDSTAQIWKIAEGPFNTNVQNETMNVVVLNHFKGRTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELRSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWDIKTGEWKQQFEFHSGILHFEILVFLYGCLCDNNYSQTVSAPTLDVDWQNNVSFATCSTDHMIYVCKIGENHPIKTFSGHQGEVNAIKWDPTGSFLASCSDDHTAKIWSLNQDKYLHDLKEHVKEIYTIRWSPTGPCTNNPNQPLVLASASFDSSVKLWDVELGKVLYSLNGHRDPVYSVAFSPNGEYLASGSMDKCMHIWSVKEGKIVKTYTGNGGIFEVGWNKDGDKVAACFSNNIVCVLDFRM 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1838 592 SMART WD40_4 378 413 IPR001680 GO:0005515
Glsi08g1838 592 SMART WD40_4 458 506 IPR001680 GO:0005515
Glsi08g1838 592 SMART WD40_4 208 247 IPR001680 GO:0005515
Glsi08g1838 592 SMART WD40_4 308 347 IPR001680 GO:0005515
Glsi08g1838 592 SMART WD40_4 551 589 IPR001680 GO:0005515
Glsi08g1838 592 SMART WD40_4 509 548 IPR001680 GO:0005515
Glsi08g1838 592 SMART WD40_4 416 455 IPR001680 GO:0005515
Glsi08g1838 592 SMART WD40_4 263 306 IPR001680 GO:0005515
Glsi08g1838 592 SUPERFAMILY WD40 repeat-like 208 590 IPR036322 GO:0005515
Glsi08g1838 592 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Glsi08g1838 592 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Glsi08g1838 592 PRINTS G protein beta WD-40 repeat signature 493 507 IPR020472 -
Glsi08g1838 592 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 306 - -
Glsi08g1838 592 Gene3D - 204 592 IPR015943 GO:0005515
Glsi08g1838 592 SMART Lish 5 37 IPR006594 GO:0005515
Glsi08g1838 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 516 557 IPR001680 GO:0005515
Glsi08g1838 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 306 IPR001680 GO:0005515
Glsi08g1838 592 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 352 - -
Glsi08g1838 592 Gene3D - 2 90 - -
Glsi08g1838 592 CDD WD40 212 548 - -
Glsi08g1838 592 FunFam F-box-like/WD repeat-containing protein TBL1XR1 2 93 - -
Glsi08g1838 592 ProSitePatterns Trp-Asp (WD) repeats signature. 493 507 IPR019775 -
Glsi08g1838 592 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 423 457 - -
Glsi08g1838 592 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Glsi08g1838 592 MobiDBLite consensus disorder prediction 111 175 - -
Glsi08g1838 592 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 248 - -
Glsi08g1838 592 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 516 553 - -
Glsi08g1838 592 Pfam WD domain, G-beta repeat 269 306 IPR001680 GO:0005515
Glsi08g1838 592 Pfam WD domain, G-beta repeat 419 455 IPR001680 GO:0005515
Glsi08g1838 592 Pfam WD domain, G-beta repeat 461 506 IPR001680 GO:0005515
Glsi08g1838 592 Pfam WD domain, G-beta repeat 212 247 IPR001680 GO:0005515
Glsi08g1838 592 Pfam WD domain, G-beta repeat 312 347 IPR001680 GO:0005515
Glsi08g1838 592 Pfam WD domain, G-beta repeat 510 548 IPR001680 GO:0005515
Glsi08g1838 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Glsi08g1838 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 423 464 IPR001680 GO:0005515
Glsi08g1838 592 PANTHER WD40 REPEAT PROTEIN 4 591 IPR045183 GO:0003714|GO:0016575
Glsi08g1838 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 465 515 IPR001680 GO:0005515
Glsi08g1838 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
Glsi08g1838 592 ProSitePatterns Trp-Asp (WD) repeats signature. 334 348 IPR019775 -
Glsi08g1838 592 Pfam LisH 8 33 IPR006594 GO:0005515
Glsi08g1838 592 Coils Coil 102 122 - -
Glsi08g1838 592 FunFam WD40 repeat-containing protein HOS15 376 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1838 Glsi-ChrGlsi08 13010279 13015399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1838 420 590 Miscellaneous Gene Families AT5G08390 30.058 4.98e-17 83.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1838 08 13010279 13015399 Glsi08g1838 08 13010279 13015399 ECH