Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1780 ATGAGAGTCCAAGCTTACATTGTCCTAAATAGACCATGGGCTTTTGTTCAGTGGCTGGAGAAAGCAATTATTGAGGAAGAGAAATTCTACCCTAAGGAGAAGGGTCCTGTTACTGATGTTGATCCCATTGGCAATTCTCCTGTAATCATACAGAAGTCCTTGCTGGAGGAAATTGCTCCAATATGGGTGAATATTTCCTTGCAAATGAAAGATGATCCAGCAACTGATAAGGCTTTTGGATGGGTTCTTGAAATGTATGCATATGCTATGGCATATGCATTGCATAATGGGGAATTGACTTATGGGAAGATTGGAGAATGGCGTTTTGACATGAGATTATATCTTATGGGTCCTCTACCAAAAAACCTTTCCTTACGCCCTCCAGGGGTTTCTGAAAGTGTGGTAAGCTTCACACCAGCTATAGTACCCAAATATTACTATAGCATGAAAATGCTGTCTAGTAAAGCTAGTCGGGATTCTCATGGCCAAGACTCCTCCTACTTTCTAGGATGGCAAGAGTACGAGAAGAACCCTTATCACCCCATTCAAAACCCTTTGGGAATCATTCAGATGGGACTTGCGGAGAATCAGCTTTCATTCGACATTCTTGAGTCATGGATTCAAAGAAATCCGGACATAGTGGGATTGAAGAAAGATGGTGTATCAGCATTTAGAGAACTGGCACTGTTCCAGGATTACCATGGGTTATCCTCTTTCAAAAATGAACTGGTGGACTTCATGGCAAAAATAAGGGGAAACAGAGTCAAATTTGCAGCGGACAAGCTAGTCCTCACCGCCGGTGCTACTCCCGCCAATGAGATTCTCATGTTTTGCCTTGCTGAGCCAGGGGAAGCTTTTCTTCTTCCCACACCGTATTACCCTGGATTTGATAGAGATCTAAAGTGGCGGACTGGGGTTGAAATTGTTCCGATACATTGCTCAAGCTTAAACGGTTTCAGAATAAGTTCCTCTGCTTTAGAACAAGCCTATCAGCAAGCCCGAAATCTGAATCTAAACGTTAAAGGGGTATTGGTAACTAACCCCTCGAATCCTCTGGGCATAACCATGAGCAAAACCGAGCTTAACACTCTCATCGATTTTGTAACTGACAAGAACATTCATATAATATGCGATGAAATTTATTCAGGGACAGTTTTCGACTCTCCCAGATTCGTAAGCATCATGGAAGTTGTAAATGAGAAAATTCAGGACAACGCTCCCATATGGAACCGCATTCATATCGTGTATAGTCTGTCCAAGGATCTTGGCGTACCAGGATTTCGAGTAGGCATGATCTACTCCAATAACGAAATGGTTGTGGCTGCAGCCACCAAAATGTCGAGCTTTGGACTGGTTTCTTCGCAAACTCAGTATTTGCTGGCCAACTTACTCTCGGACAAGAAATTCACTGATCAATACCTGAAGAAGACTCAGAGGAGACTGAAAAAGCGAAAGGAAATGCTTGTATCTGGCTTGAGAAATGCAGGGATTCAATGTTTGAAGAGCAACGCCGGGTTGTTCTGCTGGGTAGACATGAGGCATCTATTAAGCTCTGACAATTTTGAGGCAGAGAAGGAGCTTTGGAAGACAATTCTTTGCCGTGTTGGATTGAACATATCTCCAGGGTCTTCTTGCCACTGCTCTGAAGCAGGGTGGTTCAGAATTTGCTTTGCAAACATGTCCCAAGACACATTAGAAGTAGCGATGCGACGGATGAAGGTATTTACAGATTCTCGTAGCACCACTGGAGAAACAAGCCCACTTTCCAAGTGGATTTCCCAGTTTTCATCCTATCTCTGCGAACCTAATACTTATTTCTCACTCTGTTCTGGAAACAAAGGCTGCGAAGCTCCTTGCCCTTGA 1863 0.4342 MRVQAYIVLNRPWAFVQWLEKAIIEEEKFYPKEKGPVTDVDPIGNSPVIIQKSLLEEIAPIWVNISLQMKDDPATDKAFGWVLEMYAYAMAYALHNGELTYGKIGEWRFDMRLYLMGPLPKNLSLRPPGVSESVVSFTPAIVPKYYYSMKMLSSKASRDSHGQDSSYFLGWQEYEKNPYHPIQNPLGIIQMGLAENQLSFDILESWIQRNPDIVGLKKDGVSAFRELALFQDYHGLSSFKNELVDFMAKIRGNRVKFAADKLVLTAGATPANEILMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSLNGFRISSSALEQAYQQARNLNLNVKGVLVTNPSNPLGITMSKTELNTLIDFVTDKNIHIICDEIYSGTVFDSPRFVSIMEVVNEKIQDNAPIWNRIHIVYSLSKDLGVPGFRVGMIYSNNEMVVAAATKMSSFGLVSSQTQYLLANLLSDKKFTDQYLKKTQRRLKKRKEMLVSGLRNAGIQCLKSNAGLFCWVDMRHLLSSDNFEAEKELWKTILCRVGLNISPGSSCHCSEAGWFRICFANMSQDTLEVAMRRMKVFTDSRSTTGETSPLSKWISQFSSYLCEPNTYFSLCSGNKGCEAPCP 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1780 620 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 191 217 - -
Glsi08g1780 620 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 373 396 - -
Glsi08g1780 620 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 224 240 - -
Glsi08g1780 620 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 337 361 - -
Glsi08g1780 620 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 443 466 - -
Glsi08g1780 620 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 261 281 - -
Glsi08g1780 620 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 411 435 - -
Glsi08g1780 620 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 283 304 - -
Glsi08g1780 620 Gene3D - 211 466 IPR015421 GO:0003824
Glsi08g1780 620 Pfam Aminotransferase class I and II 189 571 IPR004839 GO:0009058|GO:0030170
Glsi08g1780 620 CDD AAT_like 211 573 - -
Glsi08g1780 620 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 211 466 - -
Glsi08g1780 620 FunFam 1-aminocyclopropane-1-carboxylate synthase 2 441 571 - -
Glsi08g1780 620 SUPERFAMILY PLP-dependent transferases 151 574 IPR015424 -
Glsi08g1780 620 Gene3D Aspartate Aminotransferase, domain 1 177 571 IPR015422 GO:0003824
Glsi08g1780 620 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 417 430 IPR004838 GO:0003824|GO:0009058|GO:0030170
Glsi08g1780 620 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 152 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1780 Glsi-ChrGlsi08 12636426 12642835 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1780 08 12636426 12642835 Glsi08g1780 08 12636426 12642835 ECH