Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1720 ATGGATCTGAGGGGGATCGGGTTCGATCCTCGTCTCCCGGACTTCTTTCTTGACCACATTGAATTCTCTGACGAAACCGACACCAAGTCCCACCATGCGCCGTCTCGGGCCTACGTCCGGGACTCCAAGGCAATGGCCAACACCCATGCTGATATCCTCGATCACCCCAGCGCCTACCAGTTCGCGGTGGACATGCCCGGGCTGAAAACTGACCAGATCAAGGTTCAAATGGAGGACAACACCCTGGTGGTGAGTGGGGAGAGGAGGAGAGACAAGGAGAAGGACCAAAAAGAGGGTGTCAAGTACCTTAGAATGGAGAGGAGGCACGGCAATTTTCTCAAGAAATTCGAGCTTCCCGACAATGCCAACACCGACAATATGTGTGCTAATTATCAGGATGGGGTTCTCACCATCACCGTCGACAAGAAGCCACCGCCCCAGCCCAAGCAACCTAAGACCATTCAGTGCTTTATGAACATTACAGCTTGTTCAAGTGCTTTTTGGTTGCTGGCAATTTATATTTTGGGTTTGTTCAGTGTGGCTGTGTCAATAATAAACTTCTATTTCCTTCCTCCACTAATTCCCGCCACCCTTATAAATACTCCAATATCCGTGTCTGTTTCTCTCAATCGGGATTCTAAAGCTACGAAAGAAGGGGAAATCATGGATTTCAAGCTCATGGGTTTCGAATCGCCATTGTTCAGCACTTTACATCAAATGATGGACACGACAGACGACGCTGCCGATAAGTCCTCCAACGCTCCGACCCGCACATATGTGCGTGATGCCAAGGCTATGGCTGCGACTCCGGCGGACATCAAGGAATATCCCAACTCCTATGTCTTCATCATTGACATGCCTGGGTTGAAATCTGGGGATATCAAGGTTCAGGTAGAGGATGACAACGTGCTTCAGATCAGTGGCGAGAGGAAGAGGGAGGAAGAGAACGAAGGAGCCAAGTACGTGAGAATGGAGAGAAGAGTTGGCAAGTTCATGCGCAAGTTTGTGCTGCCTGAGAATGCTAACACGGATGCTATTTCCGCTGTGTGCCAAGACGGTGTGCTGACCGTGACTGTTAAGAAATTGCCACCGCCTGAGCCCAAGAAGCCCAAGACCATCGAGGTCAAGGTTGCTTGA 1137 0.5022 MDLRGIGFDPRLPDFFLDHIEFSDETDTKSHHAPSRAYVRDSKAMANTHADILDHPSAYQFAVDMPGLKTDQIKVQMEDNTLVVSGERRRDKEKDQKEGVKYLRMERRHGNFLKKFELPDNANTDNMCANYQDGVLTITVDKKPPPQPKQPKTIQCFMNITACSSAFWLLAIYILGLFSVAVSIINFYFLPPLIPATLINTPISVSVSLNRDSKATKEGEIMDFKLMGFESPLFSTLHQMMDTTDDAADKSSNAPTRTYVRDAKAMAATPADIKEYPNSYVFIIDMPGLKSGDIKVQVEDDNVLQISGERKREEENEGAKYVRMERRVGKFMRKFVLPENANTDAISAVCQDGVLTVTVKKLPPPEPKKPKTIEVKVA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1720 378 SUPERFAMILY HSP20-like chaperones 32 151 IPR008978 -
Glsi08g1720 378 CDD ACD_sHsps-like 51 140 - -
Glsi08g1720 378 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 157 IPR002068 -
Glsi08g1720 378 FunFam 17.3 kDa class II heat shock protein-like 232 377 - -
Glsi08g1720 378 Pfam Hsp20/alpha crystallin family 272 376 IPR002068 -
Glsi08g1720 378 Pfam Hsp20/alpha crystallin family 51 155 IPR002068 -
Glsi08g1720 378 Gene3D - 14 156 IPR008978 -
Glsi08g1720 378 Gene3D - 227 377 IPR008978 -
Glsi08g1720 378 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 262 378 IPR002068 -
Glsi08g1720 378 SUPERFAMILY HSP20-like chaperones 249 370 IPR008978 -
Glsi08g1720 378 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 233 376 IPR031107 -
Glsi08g1720 378 FunFam 17.3 kDa class II heat shock protein-like 14 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1720 Glsi-ChrGlsi08 12240874 12243346 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1720 08 12240874 12243346 Glsi08g1720 08 12240874 12243346 ECH