Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1717 ATGGCTCTGCCATTCCGAAATGCTGTAGCCAAGCCTTTGGGCACACCTCCAAACCCCTCCCTTGTAACCTCCATAACCTCACTTCTTCAAACCCTGAATCCTCAAAACCCTGATGACTCTAACATCGGTTCCCAACCCCTTAAGCAATTCTCGTCTCACCTCAACCCAAGCTTAGTTATTCAAGTCATTAAGAACCAGAATAACCCTTACCATGCCCTCTTCTTCTTCAACTGGGCTTCTAAGCCTGAACCTAACCCCAACAACTATTCTCATACCCATCAATGTTACATCGCCATCACTGATGTCCTACTTTCTCACTCCCTTTTCTCCACGGCCTTCTCTCTCCTTCACAAGTCGCACAAAGTCTCTGACTTTATTATTGCCAGATTTATCAAAGCTTTTGGTGATCGTGGCGATATTCGGGGTGCCATTCATTGGTTTCACAAAGTGAAATCGTTTGAAAGAGGTCGTTGTTTGTTCTCCTATAATGCGAGTTTGGGTGTGTTGGTGAGAGCAAATCGAGTCAATTTGGCCGAGGCTTTCTACGATCAGATTGTGAAGGAAGGCGTGGTCAAACCCGATGTTTACACTTATACGACAATGATTAGGGGCTACTGCAAAATGGGCATGATAGAGAATGCGAGGAAGGTGTTCGATGAAATGGACTGTGACCCGAACTTGTTTACTTACAACACAATGATCAACGTCTTTTGTAAGAAAGGTGATATGGAGAGTGCCAGGAGGATTCTTCATCGAATGATGGAAAGTAAGAATTGTATACCAGATGTGGTAACTTATACCACTTTGATTGATGGGTATTGCAAGAAAGGTGAATTGCATGAGGCAATGAAGTGCATGATGGAGATGGCGAAACAAGGTTGTCAACCAAATGTCTTGACCTACAATGCACTTATAGAAGGTCTTTGTTTGAGCGGAAATGTGCATGAAGCGAGGATGATGATGACTAGGATGCGGTTAAACGGTTTAAAAGACAATGTTGTCACACACACTAGCATATTGAAGGGGTTTTGCATTGTGGGAAAGTCTGATGAAGCTATCAAGCATATGAAGGAAATGGTTAGTCTTGGGATGAATCCAGATGTGAAGTCATATGGTATAATTGTTAACGAGTGTTGCAAAATTAAAAAACCAGGCGAAGCAATTTCACTTCTAAGGGAAATGAGGGCGAGGGGCATTAAGCCTAGTGTGTCAAGTTTCAATGCGGTGTTTAGAATTCTTGTGGATATGGGGAAGCTTGAAGAAGCAATTCTTCTTCACAAGCAGATGCCTCAAATGGGCTGCTCACCTAATTTCTTATCATATAGCATAGTGATATGTGATCTTTGCAAAGTGAAGGGTAGGATGAAAGAAGTTGAAGAGCTTGTTTCTGACATGCTTCAGAATGGACACAATCTGGATGCCTCCATGTACAGCTGCTTACTTATGGGATATTGTGAGGACGGGAATGAGGAAATGGCAATGCAGACGGTTTATGACATAATTAATAAGAACTACGTAATTAATTTAGACACCTTCTCCACTTTTGTCAATCAGTTGTGCGCAAGGGGAAATGTCAAAGAGGCGGAGACAATATTTGAGGAGATGTGCAGAAGATGCCCTGTACCTGATGTTAATGCTTACAAAATGGTTTTAACACGGAATTCATACTCTTATTCAGCAAAGTAA 1686 0.4211 MALPFRNAVAKPLGTPPNPSLVTSITSLLQTLNPQNPDDSNIGSQPLKQFSSHLNPSLVIQVIKNQNNPYHALFFFNWASKPEPNPNNYSHTHQCYIAITDVLLSHSLFSTAFSLLHKSHKVSDFIIARFIKAFGDRGDIRGAIHWFHKVKSFERGRCLFSYNASLGVLVRANRVNLAEAFYDQIVKEGVVKPDVYTYTTMIRGYCKMGMIENARKVFDEMDCDPNLFTYNTMINVFCKKGDMESARRILHRMMESKNCIPDVVTYTTLIDGYCKKGELHEAMKCMMEMAKQGCQPNVLTYNALIEGLCLSGNVHEARMMMTRMRLNGLKDNVVTHTSILKGFCIVGKSDEAIKHMKEMVSLGMNPDVKSYGIIVNECCKIKKPGEAISLLREMRARGIKPSVSSFNAVFRILVDMGKLEEAILLHKQMPQMGCSPNFLSYSIVICDLCKVKGRMKEVEELVSDMLQNGHNLDASMYSCLLMGYCEDGNEEMAMQTVYDIINKNYVINLDTFSTFVNQLCARGNVKEAETIFEEMCRRCPVPDVNAYKMVLTRNSYSYSAK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1717 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 472 IPR002885 -
Glsi08g1717 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Glsi08g1717 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Glsi08g1717 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 224 IPR002885 -
Glsi08g1717 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Glsi08g1717 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Glsi08g1717 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 261 IPR002885 -
Glsi08g1717 561 Pfam PPR repeat 476 503 IPR002885 -
Glsi08g1717 561 Pfam PPR repeat family 401 450 IPR002885 -
Glsi08g1717 561 Pfam PPR repeat family 261 309 IPR002885 -
Glsi08g1717 561 Pfam PPR repeat family 332 380 IPR002885 -
Glsi08g1717 561 Gene3D Tetratricopeptide repeat domain 288 362 IPR011990 GO:0005515
Glsi08g1717 561 Gene3D Tetratricopeptide repeat domain 21 221 IPR011990 GO:0005515
Glsi08g1717 561 Gene3D Tetratricopeptide repeat domain 222 287 IPR011990 GO:0005515
Glsi08g1717 561 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 111 367 - -
Glsi08g1717 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Glsi08g1717 561 Gene3D Tetratricopeptide repeat domain 363 452 IPR011990 GO:0005515
Glsi08g1717 561 Gene3D Tetratricopeptide repeat domain 453 558 IPR011990 GO:0005515
Glsi08g1717 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Glsi08g1717 561 Pfam PPR repeat 191 221 IPR002885 -
Glsi08g1717 561 Pfam PPR repeat 222 253 IPR002885 -
Glsi08g1717 561 Pfam PPR repeat 504 535 IPR002885 -
Glsi08g1717 561 NCBIfam pentatricopeptide repeat 370 403 IPR002885 -
Glsi08g1717 561 NCBIfam pentatricopeptide repeat 405 437 IPR002885 -
Glsi08g1717 561 NCBIfam pentatricopeptide repeat 511 544 IPR002885 -
Glsi08g1717 561 NCBIfam pentatricopeptide repeat 264 298 IPR002885 -
Glsi08g1717 561 NCBIfam pentatricopeptide repeat 334 368 IPR002885 -
Glsi08g1717 561 NCBIfam pentatricopeptide repeat 300 329 IPR002885 -
Glsi08g1717 561 NCBIfam pentatricopeptide repeat 196 222 IPR002885 -
Glsi08g1717 561 NCBIfam pentatricopeptide repeat 228 263 IPR002885 -
Glsi08g1717 561 SUPERFAMILY HCP-like 136 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1717 Glsi-ChrGlsi08 12221581 12223266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1717 293 552 Glycosyltransferase AT1G05670 25.475 1.78e-15 77.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1717 08 12221581 12223266 Glsi08g1717 08 12221581 12223266 ECH