Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1703 ATGTTCTCTTCCTTTCTCATCCTACGGTTTACCCGCCCACTCCTGGATTTAAACAGTCTTAGGTTTCTGTTTTCCTTTTATGTCAGCGGCTCGAGTTCAAATTTGGCTCAAGATATAGCAGGTCCTCAGTTTCGAACTTCCAAGGCTTCTATGCAGATCACGTCTATTTCTTCTGTTACACATAATCTAGCTGGATTTGGCTTCAGTTTTAGGTCAAAGACAAAAAGGAAATCTCCTGCCCCTGTAGCTTTGTGCAAGATTTCAAGATTTACAATCGGGTTGCTCTCGAGTGAAGCCAAAAGGCTCCAGTCTTATCCTGTGCTCTCTCTTGCTCAGCGTTGATCTTCAAACGTAGTAGCTGGTCCATTGGAGAATACTGATGTGCAATTGCTTGGAGACATAAACCAAATAGTTCGTGATGCTGAACGCCAAGGATGTGCTTGCCTATCTTTTCCTGAATTGAACTGGACAGAACATGCAGTGGAGCGTAAAACTGGCGTTGAATTTCCTCTGATTTTGGCATGATCTTCTCAGGTAATGTATAAGGTCAAAATTGTTGGTTTCAATAATCCATTGGATGTGCTTGAGCAGGATTTGGCTAATAATTGTCTTGCTAAGTTACAGAAGCTTTATGTTGGTTTCATGGTCATAGTGTTGATTTTGCTGGATCGTGCTTTTGAGAAATCCCTTCGAGCTCGATTAGTCAAGGGAAAAGTATTTGATTTTCGACAAGTAGCTCATGGACGTCTGGTTACTGAAATCGGTGGCAATCCGATTGGAAGCGTCCACAGCAAAGATATGTGTCGGTCTTTCTTTGACATGTACATTGGAGATATCCCTGTGAGCGAGCAAACAAAAGAAGAGATTGGCAGGAATATTGCTACTATCATTAGGAGGACCTACAGAAAGACAATGCAGAAACTGCAAAAAGATTTGTGCCTGAACCACATCTGGACGCTGGAGCGAGAGTCTGCATTTACCAGGGAGAGAATTTGGGTAGTGCAGTGCCATGACATTGATTTGTTTAGAAATAAGAAGCCACAGAAACATTTACGGTTCATGGGTATTCGAAGAGCATCTTGGGCCATTATTTTGACATGGCTTACTGTGTTTGAAGGATGTTTGAATTTTGTGAATGGTGAGCTCAATTATAAGGAAGCTCTCACCAAGTCAATCATATTCCTAGAGGCACAACGATCAGGGAAGCTCCCTCCAAATAACAGGGTGCCTTGGAGAGGAGACTCAGCACTCGATGATGGAAAACTCGCTAATGTGGACCTTTCTGGAGGATATTATGATGCAGGGGATAATGTCAAATATGGGCTTCCCATGGCTTTCACAGTTACTACTCTCTCATGGGCTGCCATTTTTTACAAACATGAATTAGAAGCTGCTAATGAAATGAAAAATGTTCAAGATGCCATTAAATGGGGTACCGATTATTTTCTTAAAGCTAGTTCTCGACGTGGTCGATTATATGTGCAGGTAGGGGACCCAGTAGAGGATCACCATTGTTGGGTTCGACCAGAAAATATGAAGACAAAAAGAACAGTTTTGAAGATTGATAGTAACACGCCCGGGTCAGAGGTTGCAGCTGAAACTTCAGCAGCAATGGCTGCTTCTTCTGTTGTTTTTAGACATGTAAATCAGTCATATTCTCGTCGTCTCCTCAACAAGGCCAAACTGCTTTTCAAATTAGCAAAATCGCATAAAGGAACTTATGATGGAGAATGTCCCTTCTACTGCTCTTTCTCAGGCTATAATGACGAAATGTTGTGGGCAGCAACGTGGCTATACTACGCAACCAGGAAGACAATGTATCTCAAGTACATTCAAGAAGACAGCATTAGTGCAACTGTAAATGAGTTTAGTTGGGATCTTAAATATGCAGGAGCTCAAATCCTCCTCTCCAAGTTACATTTTTCGGGAACAAAGAACCTGGAAACATTCAAAAGACAAGCCGACAGTTTCGTATGTTCAGTGCTTCCTGATAGTCCCTACCACCAGATTACGTTAACTCCAGGTGGGTTAATTCATTTGAGAGATGGAGCCAACTCGCAATATGTCACTGGAACGGCTTTCTTGTTTACCGTCTATAGCGATTTGCTCGCTCAATACAATCAAAAAGTCATTTGTGGAGAAAAACAATTCTCCTCAACCTCGCTCATGAGTTTCGCCAAAAAACAAATTGATTACATACTGGGGAAAAACCCAGAAGGAAGGTCATACATGGTAGGATTTGGGAAAAACCCACCAAGGCAAGCTCACCATAGAGGAGCTTCGGTGCCAGTGTTGGCCAAACAAGAAGTGGTGAACTGTCCCATGAGCTTCGAGAAATGGTTTGCACAAAGTGGACCAAACCCTAATGAGCTAACCGGTGCCATCTTGGGAGGACCCGATCGCCACGACAAGTTCAACGATAAACGTTCCGATTCCACCATGACTGAACCATGCACCTACGTCAACTCCCTAGCAGTTGGTGCTCTAGCAAAGCTTGCCTCCAAGACCGCTAATGAGTCTGTGTGCTTCATCCCGCTAGTCTGCTTTGCTTTTCCGCTTTCCTCTTTCATCTTCTCTTTGCTCTCCGTTTGA 2592 0.4313 MFSSFLILRFTRPLLDLNSLRFLFSFYVSGSSSNLAQDIAGPQFRTSKASMQITSISSVTHNLAGFGFSFRSKTKRKSPAPVALCKISRFTIGLLSSEAKRLQSYPVLSLAQRXSSNVVAGPLENTDVQLLGDINQIVRDAERQGCACLSFPELNWTEHAVERKTGVEFPLILAXSSQVMYKVKIVGFNNPLDVLEQDLANNCLAKLQKLYVGFMVIVLILLDRAFEKSLRARLVKGKVFDFRQVAHGRLVTEIGGNPIGSVHSKDMCRSFFDMYIGDIPVSEQTKEEIGRNIATIIRRTYRKTMQKLQKDLCLNHIWTLERESAFTRERIWVVQCHDIDLFRNKKPQKHLRFMGIRRASWAIILTWLTVFEGCLNFVNGELNYKEALTKSIIFLEAQRSGKLPPNNRVPWRGDSALDDGKLANVDLSGGYYDAGDNVKYGLPMAFTVTTLSWAAIFYKHELEAANEMKNVQDAIKWGTDYFLKASSRRGRLYVQVGDPVEDHHCWVRPENMKTKRTVLKIDSNTPGSEVAAETSAAMAASSVVFRHVNQSYSRRLLNKAKLLFKLAKSHKGTYDGECPFYCSFSGYNDEMLWAATWLYYATRKTMYLKYIQEDSISATVNEFSWDLKYAGAQILLSKLHFSGTKNLETFKRQADSFVCSVLPDSPYHQITLTPGGLIHLRDGANSQYVTGTAFLFTVYSDLLAQYNQKVICGEKQFSSTSLMSFAKKQIDYILGKNPEGRSYMVGFGKNPPRQAHHRGASVPVLAKQEVVNCPMSFEKWFAQSGPNPNELTGAILGGPDRHDKFNDKRSDSTMTEPCTYVNSLAVGALAKLASKTANESVCFIPLVCFAFPLSSFIFSLLSV 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1703 863 Pfam Glycosyl hydrolase family 9 384 829 IPR001701 GO:0004553|GO:0005975
Glsi08g1703 863 Gene3D - 221 275 IPR016088 -
Glsi08g1703 863 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 732 758 IPR018221 -
Glsi08g1703 863 PANTHER ENDO-1,4-BETA-GLUCANASE 370 835 - -
Glsi08g1703 863 SUPERFAMILY Chalcone isomerase 231 298 IPR036298 GO:0016872
Glsi08g1703 863 SUPERFAMILY Six-hairpin glycosidases 382 840 IPR008928 GO:0005975
Glsi08g1703 863 Gene3D - 379 844 IPR012341 GO:0005975
Glsi08g1703 863 FunFam Endoglucanase 380 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1703 Glsi-ChrGlsi08 12127134 12136129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1703 363 834 Glycoside Hydrolase AT3G43860 71.158 0.0 710
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1703 08 12127134 12136129 Glsi08g1703 08 12127134 12136129 ECH