Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1611 ATGAAGCAAACTTCGTCTGAAGCAGTCTCGTCTTTATCTTCTACACCCTCTTTAACAGACCAATCACAGGTTGCCACTTCGTCGTCGTCGTTGGCGTCACCGGACAAACTCATCTTAGGGTCGTCGTCGGCGGCTCCCGAGGACTTGGCTATGGGCTCAAGGGACGGAGGCGGCGCCCAGGAGACCGTGACCGTCGAACGCCGGGGCGACTACTCCGCCGTTTGCCGATGGACGGTTCATAATTTTCCAAGAATAAAAGCTAGGGCACTGTGGAGCAAGTACTTTGAGGTCGGCGGTTATGATTGCCGTCTCTTGATATACCCTAAAGGCGACTCCCAAGCTTTGCCAGGTTACATCTCTATCTACCTCCAAATCATGGACCCCCGGGGCACTTCGTCGTCCAAATGGGACTGCTTTGCCAGTTATCGTTTAGCAATCGGAAATGTCGCTGACGATTCCAAGGCCATTCATCGGGATTCGTGGCATCGGTTCTCGAGTAAGAAGAAATCACACGGGTGGTGTGATTTCACGCCTTCCTCTACAGTATTGGATCCAAAATTGGGTTATTTGTTTAATAATGATTCGGTGTTGATAACAGCCGATATACTTATTCTTAATGAGTCGATTAATTTTACTCGAGACAACAATGAGGTGCAATCATCGGCATCTTCTTCATCCATGATATCTTCCTCTGTAGTTGCGGGCCCAGTGTCCGATGTGTTGAGTGGAAAATTCACTTGGAAAGTGCATAATTTTAGTTTATTTAAGGAGATGATAAAAACCCAGAAGATAATGAGCCCGGTTTTCCCTGCTGGGGAGTGTAATTTGAGGATTAGTGTGTATCAGAGCTCGGTTAATGGGGTAGAATATCTGTCAATGTGTTTGGAAAGCAAGGATACGGACAAAACGGTGATGTTGTCTGATAGGAGTTGCTGGTGTTTATTTCGAATGTCAGTCTTGAACCAGAAGCCAGGCTCGAATCACATGCATAGGGATTCATATGGGCGGTTTGCAGCTGACAATAAGAGTGGTGACAATACGAGCTTGGGATGGAATGATTATATGAAGATGTCAGATTTCATTGGCCCTGATTCAGGGTTTCTGGTGGACGATACTGCAGTTTTTAGTACATCATTTCATGTGATTAAAGAGTTTAGTAGCTTCTCTAAGAATGGGGCTTTAATTGCAGGGAGAAGTGGGAGTGGGGCAAGGAAATCAGATGGCCATATGGGAAAGTTCACTTGGAGGATAGAAAATTTCACAAGGTTGAAGGATTTATTGAAGAAGAGAAAAATTACAGGTCTTTGCATCAAGAGCAGGAGGTTTCAAATTGGTAATCGGGATTGTCGTCTCATTGTTTATCCCCGAGGGCAGTCTCAACCACCATGCCACCTTTCAGTGTTTCTTGAAGTTACAGATTCACGAAATACTTCTAGTGATTGGAGTTGTTTTGTTAGTCATCGGTTGTCGGTTGTGAACCAGAGGATGGAGGAGAAGTCTGTCACCAAGGAATCTCAGAACCGCTACTCCAAGGCTGCAAAGGATTGGGGCTGGCGGGAATTTGTGACACTTACAAGCCTCTTTGATCAAGATTCGGGTTTTCTTGTCCAGGACACTGTTGTATTCTCGGCAGAAGTTCTTATATTGAAAGAAACATCAATAATGCAGGATTTTATTGATCATGATTCTGAAGTGAGCACTAGTGGTTCCTTTATTGATAGGTATGCAAAAAGAAGTACCTTTACATGGAAAGTGGAGAATTTCCTGTCTTTTAAGGAAATAATGGAGACTCGAAAAATCTTCAGTAAATTCTTTCAGGCTGGCGGATGTGAACTTCGGATTGGTGTGTACGAGTCCTTTGACACCATATGTATTTATCTAGAGAGTGACCAGGCTGTTGGTAGTGATCCAGATAAAAACTTTTGGGTCAAATACAGGATGGCTGTCATGAATCAAAAGAATCCGGCCAAGACAGTGTGGAAGGAATCCTCTATCTGCACTAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATATTGGAAGCAGATGCAGGGTTTCTTGTCCGTGACACTGTTGTTTTTGTTTGTGAAATATTAGATTGCTGCCCTTGGTTTGAGTTTTCAGACTTAGAGGTTTTAGCTTCAGAGGATGATCAGGATGCTTTGACAACCGATCCTGATGAACTCATTGACTCTGAAGACAGTGAAGGAATGAGTGGAGATGAAGAAGATATTTTCAGAAATCTTCTTTCCAGAGCTGGATTTCACTTGACATATGGAGATAATCCTTCACAGCCACAAGTTACATTAAGAGAAAAGCTTTTAATGGATGCTGGTGCAATTGCTGGGTTTCTGACTGGACTCCGGGTTTATCTTGATGATCCTGTGAAAGTAAAGCGATTGCTTCTTCCAACCAAGCTCTCTGGTAGTTGTGATGGGAAGAAGGTCACCAAGGCTGATGAATCTTCTCCCAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTGCAGCAGGCAATGATTGATTTACTTTTGGATATAATGGTTGAGTGCTGCCAACCTTCTGAAGGGTCTTCTGTTGCTGATTCTCTTGATGCAAGCTCAAAAGCATCTCCAGATCGCAGTGGAGCTGCTAGTCCTCTCGAACGTGATAGAGAAAATGGAGCAACAGAATCTGCACAATTTCCTGTTTACGAGAGATTGGATCTTGTTGCAGAAGAAAGTAGTAGTACATCCGCTGTGCAAAGCTCTGATTTAAATAGTGATGGTATTCGGGAGAAAGCTCTTCCTGGACAGCCTATTTTTCCACCAGAAACATCGGCTACTGTTTCAGAAAATGCATCTTTTTGGTCAAAGACCAAGTGCCCTGAACAGTCTGAGGAGCTGTTAGGTTTGATTGTAAACTCACTAAGAACCCTGGATGGGGCTGTTTCGCAAGGCTGTCCTGAGCCACGCCGGCGGCCTCATTCTGCACAGAAAATTTCCCTTGTGTTGGACAAAGCTCCTAAGCATTTGCAAGTGGACCTAGTAGCTCTGGTTCCCACATTGGTTGAGCATTCAGAACATCCGCTGGCTGCCTATGCACTTCTTGAGCGACTTCGAAAGCCAGATGCAGAACCGGCTTTGCGAATACCTGTTTTTGGGGCTCTTAGTCAATTGGAGTGTGGTAGTGAAGTGTGGGAACGTGTTCTATTCCAGTCATTAGAGCTCTTGACGGACTCAAATGATGAACCCCTAGCTGCAACTATAGATTTTATATTCAAAGCAGCATCTCAGTGTCAACATCTCCCTGAAGCAGTTAGATCTGTTCGCGTTAGGCTGAAAGATCTAGGTCTTGAGGTGTCACCATGTGTCCTTGAATTTTTGAGCAAGACTTTAAATAGTTGGGGGGATGTTGCTGAAACCATACTGAGGGACATTGATTGTGATGATGACTTTGGTGACAGTTGCTCAGCACTGTCATGTGGGCTTTTCTTATTTGGTGAACATGGCAATGCTGATAATGGACTGCATGTAATTGATGAGCAGGGTCTCCGAGCAACTCGTTATTTTTCTGATATTTATATACTGATTGAGATGCTGTCTATTCCTTGTCTTGCTGTTGAAGCTTCTCAAACATTTGAGAGAGCTGTAGCTCGAGGTGCAATTGGTGCTCAGTCTGTAGCCTTGGTTTTGGAAAGGCGCATCTCACAAAGATTGCATAGTAGTGCTAGAAATGTTGCTGAAAATTTTCCAAGTACAGATGCTGTGGCAGAGGGAGATGCCAATGAGCCCTTTGGAGTTCCAAGGGAGGATTTTACTTTTGTTCTTGGTCTTGCTGAAACATTAGCAGTCTCCAGAGACCCATGTGTGAAAGAATTTGTAAAGTTACTGTATATGATATTGTTTAGATGGTATGCCAATGAATCTTTTAGAGGGAGGATGGTGAAGAGGCTCGTTGATCGTGCCACCAGCACTACAGACAATGGTCATGAAGTAGATTTGGATTTGGATATCTTAGTTACTTTGGTCTGTGAGGAGCAGGAAATTATTAGACCTGTTTTGAGTATGATGCGTGAAGTTGCTGAACTTGCAAATGTTGATCGGGCTGCTTTATGGCACCAGTTATGTGCTAGTGAAGATGAAATTATTCGTGTTCGTGAAGAAAGTAAAGCTGAGATTTCTAATATGGCCAGGGAAAAAGCTATTGTATCACAAAAGCTGAGTGAATCTGAGGCTGCAAACAACCGTCTCAAGTCTGAAATGAAGGCTGAGATGGATCGATTTGCTCGGGAGAAGAAGGAGCTATTAGAACAAATACATGATGTTGAGAGTCAGCTTGAGTGGATTCGCTCTGAGCGGGATGATGAAATAGTAAAGCTCTCATCAGAGAAAAAAGCTTTTCAGGACCGCCTGCATGATGCAGAGACACAACTTTCACAATTGAAGTCCCGGAAACGTGATGAATTGAAGAAAGTAGTCAAGGAGAAAAATGCACTCGCGGAAAGATTGAAGAGTGCCGAAGCTGCACGGAAGAGATTTGATGAAGAACTGAAAAGATATGCAACAGAAAATGTGACTCGGGAAGAAATCCGGAAATCACTTGAGGATGAAGTTCATAGATTGACACAAACAGTTGGGCAAACTGAGGAAGAAAAGCGTGAGAAGGAAGAGCAGGTTGCTAGGTGTGAAGCATATATTGATGGCATGGAATCAAAATTGCAGGCCTGCCAGCAATATATTCACACACTGGAGGCTTCACTTCAGGAGGAAATGTCACGGCATGCCCCTCTTTACGGTGCTGGTCTGGAGGCTTTATCAATGAAAGAGTTGGAAACACTTTCACGTATCCATGAGGAAGGGCTGAGGCAGATCCACGCCCTTCAACAGCGTAAAGGGAGTCCAGCTGGCAGTCCTCTTGTGAGTCCCCATGCTCACCCGCACAGCCATGGATTATATCCTGCTGCATCCCCAATGGCTGTGGGACTGCCTCCCTCACTCATCCCAAATGGGGTAGGGATCCACAGCAATGGGCATGTGAACGGTGCAGTTGGACCCTGGTTTAACCACACTTAA 5067 0.4423 MKQTSSEAVSSLSSTPSLTDQSQVATSSSSLASPDKLILGSSSAAPEDLAMGSRDGGGAQETVTVERRGDYSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIGNVADDSKAIHRDSWHRFSSKKKSHGWCDFTPSSTVLDPKLGYLFNNDSVLITADILILNESINFTRDNNEVQSSASSSSMISSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKTVMLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGPDSGFLVDDTAVFSTSFHVIKEFSSFSKNGALIAGRSGSGARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQDFIDHDSEVSTSGSFIDRYAKRSTFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVKYRMAVMNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDILEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGMSGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPVKVKRLLLPTKLSGSCDGKKVTKADESSPSLMNLLMGVKVLQQAMIDLLLDIMVECCQPSEGSSVADSLDASSKASPDRSGAASPLERDRENGATESAQFPVYERLDLVAEESSSTSAVQSSDLNSDGIREKALPGQPIFPPETSATVSENASFWSKTKCPEQSEELLGLIVNSLRTLDGAVSQGCPEPRRRPHSAQKISLVLDKAPKHLQVDLVALVPTLVEHSEHPLAAYALLERLRKPDAEPALRIPVFGALSQLECGSEVWERVLFQSLELLTDSNDEPLAATIDFIFKAASQCQHLPEAVRSVRVRLKDLGLEVSPCVLEFLSKTLNSWGDVAETILRDIDCDDDFGDSCSALSCGLFLFGEHGNADNGLHVIDEQGLRATRYFSDIYILIEMLSIPCLAVEASQTFERAVARGAIGAQSVALVLERRISQRLHSSARNVAENFPSTDAVAEGDANEPFGVPREDFTFVLGLAETLAVSRDPCVKEFVKLLYMILFRWYANESFRGRMVKRLVDRATSTTDNGHEVDLDLDILVTLVCEEQEIIRPVLSMMREVAELANVDRAALWHQLCASEDEIIRVREESKAEISNMAREKAIVSQKLSESEAANNRLKSEMKAEMDRFAREKKELLEQIHDVESQLEWIRSERDDEIVKLSSEKKAFQDRLHDAETQLSQLKSRKRDELKKVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEIRKSLEDEVHRLTQTVGQTEEEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHALQQRKGSPAGSPLVSPHAHPHSHGLYPAASPMAVGLPPSLIPNGVGIHSNGHVNGAVGPWFNHT 1688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1611 1688 Coils Coil 1405 1450 - -
Glsi08g1611 1688 Gene3D - 1447 1639 - -
Glsi08g1611 1688 MobiDBLite consensus disorder prediction 864 896 - -
Glsi08g1611 1688 Coils Coil 1455 1521 - -
Glsi08g1611 1688 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 570 704 IPR008974 GO:0005515
Glsi08g1611 1688 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 401 555 IPR008974 GO:0005515
Glsi08g1611 1688 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 238 385 IPR008974 GO:0005515
Glsi08g1611 1688 PANTHER TRAF-LIKE FAMILY PROTEIN 25 1688 - -
Glsi08g1611 1688 MobiDBLite consensus disorder prediction 1 38 - -
Glsi08g1611 1688 SUPERFAMILY TRAF domain-like 579 703 - -
Glsi08g1611 1688 ProSiteProfiles MATH/TRAF domain profile. 578 702 IPR002083 GO:0005515
Glsi08g1611 1688 ProSiteProfiles MATH/TRAF domain profile. 72 202 IPR002083 GO:0005515
Glsi08g1611 1688 ProSiteProfiles MATH/TRAF domain profile. 410 546 IPR002083 GO:0005515
Glsi08g1611 1688 ProSiteProfiles MATH/TRAF domain profile. 242 379 IPR002083 GO:0005515
Glsi08g1611 1688 MobiDBLite consensus disorder prediction 1 37 - -
Glsi08g1611 1688 MobiDBLite consensus disorder prediction 913 941 - -
Glsi08g1611 1688 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 70 219 IPR008974 GO:0005515
Glsi08g1611 1688 CDD MATH 411 546 IPR002083 GO:0005515
Glsi08g1611 1688 CDD MATH 243 375 IPR002083 GO:0005515
Glsi08g1611 1688 Pfam MATH domain 81 204 IPR002083 GO:0005515
Glsi08g1611 1688 Pfam MATH domain 591 698 IPR002083 GO:0005515
Glsi08g1611 1688 Pfam MATH domain 442 548 IPR002083 GO:0005515
Glsi08g1611 1688 SUPERFAMILY TRAF domain-like 72 209 - -
Glsi08g1611 1688 MobiDBLite consensus disorder prediction 864 878 - -
Glsi08g1611 1688 SUPERFAMILY TRAF domain-like 240 385 - -
Glsi08g1611 1688 CDD MATH 580 702 IPR002083 GO:0005515
Glsi08g1611 1688 SUPERFAMILY TRAF domain-like 411 552 - -
Glsi08g1611 1688 SMART math_3 74 182 IPR002083 GO:0005515
Glsi08g1611 1688 SMART math_3 415 527 IPR002083 GO:0005515
Glsi08g1611 1688 SMART math_3 583 683 IPR002083 GO:0005515
Glsi08g1611 1688 SMART math_3 247 360 IPR002083 GO:0005515
Glsi08g1611 1688 Coils Coil 1685 1688 - -
Glsi08g1611 1688 MobiDBLite consensus disorder prediction 1625 1650 - -
Glsi08g1611 1688 CDD MATH 76 202 IPR002083 GO:0005515
Glsi08g1611 1688 Coils Coil 1529 1563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1611 Glsi-ChrGlsi08 11481686 11490070 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1611 08 11481686 11490070 Glsi08g1611 08 11481686 11490070 ECH