Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1587 ATGGAGCTAGTAGGAAGTGAAAAGGACACTGTAGTTACTCAAGTTAGCATCGGCGGATTTGATAGTCAGGTCAAAGCAAAGGATCTCGTGACATACTTGGAAGACAAAATTGGACTTGTATACAGGTGTAGGCTGAAAACTTCTGGTACCCCTCCGGAATCTTATCCAGATTTTAAAATCATTAACACTTCAGAAATTGGCAGAACAGATGATTGTAAGAAGGTGGAGCCCCATGCGTTTGTGCATTTTGCAATGCCTGAATCTGCAACTGAGGCCCTCAATGCTGCTGGCCGTTGTGATCTATTTTGGAATAATCAACCTTTAAAGGTTAGCTTGGGACCTGAAAATCCATACTTCTTGAACCAAAGGAGGAGAACTACAACTCCTTATAAGTTATCTGATGTGCTCGTTGAAATTGGCACTTTAGTTGACCCAGAGAAATTTTTTGTTGCCTGGAGAGGACCTGACAAAGGGGTCAACTTTCTGGTAGATCCTTTTGATGGCATGTGCAAATTTTGTTTCAATAGTGATATTGCTTTCTCTTTCAAGGGACTAGGGAAAAAAGCAGTGATAAAGTGTGATTTTCAGGTGGGTTTCTTGGTTAGAGACATAAACGAGATCAGGAGATACAATGATACATCATATCGAGTTATTTTATTACATCTGGCATCATCACCTTTGGTTTGGTACAGAACCGCTGATGATGACATTGAAGATTTAGTTCCATTTGATTTGCTGGATGATGATGATCCCTGGATCAGAACAACTGATTTTACACCCAGTGGGGCCTTAGATCGATGCAATTTTTATAGAATTTCTATCCCCCCCAGGTATGGTGGGAAATTGACGAAGGCCATGAATTATCTGAGAGGCCAACGAGTGCGGGAGATTTTACTTGAACGACCAATTAAGATAATGGATGAACCTGCTTATGGGATGCCCATGTCAGATCCTTTCTTCTCTATTCATTACTGGGAAGGCATCACATTTGATATTTTGTTCTTAGTTAATGCAATCATACACAAAGGAATATTCAATCAACACAGGTTGTCAGATAGCTTTTTTGAGTTGCTGAGAAATCAACCTAAGGAGGTCAATGTGGCTGCGCTGAAGCACTTGTGTTCTTACAAGCGCCCAGTGTTTGATGCAACCAAGAGGTTAAAAACAGTCCAAGAATGGTTGCTCAGAAATCCGAAGCTTTACCAGAACTCTAAACGGTTAGATGATATTGTTGAGGTTCGAAGATTGATAATCACTCCGGCTAAAGGCTATTGTCTACCACCAGAAGTTGAAATGTCCAATAGGGTTCTTAGGAGTTTCAAAGAAGTTGCAGATCGCTTCTTGAGAGTCACATTTATGGATGAAGGCATGCAGACAATCAATGCAAATGCTCTTAATTATTATGTTGCTCCTATAGTGAAGGAAATCACATCGAACTCCTTTCCACAGAAGACAAATATATATAGAAGGGTGAAGACTATCCTGGAAAAGGGGTTTTACTTATGTGGTCGACAATATTCATTTTTGGCCTTCTCATCCAATCAACTGAGAGATCGTTCTGCTTGGTTTTTTGCTGAAGAAAACAACATAAGTTGTGATAATATAAGACGTTGGATGGGCAAGTTTAATCAGAGGAATGTTGCAAAATGCGCTGCTAGGATGGGACAGTGCTTCTCATCTACATATGCAACTGTGGAGGTTGCAGCAAATGATGTTAATTCCATACCTGATATTAAGAGGAATAATTATGATTTCTCGGACGGAATTGGTATTATTACTCCTGATCTTGCTAGTGAAGTAGCTGAAAAGTTGAAATTGGACGATGTACCCTCTGCTTATCAGATCAGGTATGCTGGTTATAAAGGGGTTGTGGCCTGTTGGCCAGCTAAAGGGGATGGGTTCCGACTTTCTTTGAGACCAAGTATGAACAAATTTCAATCTTCTCACACTACCTTGGAGATTTGTTCTTGGACTAGGTTTCAGCCCGGTTTCCTTAATAGACAGATTGTGACACTGCTTTCAGCGTTGAATGTGTCTGACGAAACATTTTGGAAAATGCAGGAGGCAATGGTTTCTAAGTTAAACCAAATGCTTGTGGATGCAGATGTGGCCTTTGATGTTCTCACTAGGTCTTGTGCTGAACATGGAAATGCTGCGGCCATAATGTTGAGTGTTGGTTTTAGTCCCCAAGCGGAACCTCATCTTAGAGGCATCTTAACCTCTGTACGTGCTGCACAGCTTTGGGGCCTTAGAGAAAAGGCTAGGATCTTTGTCTCTTCCGGGCGATGGTTGATGGGTGTCTTAGATGAATTGGGTGTACTTGAGCAAGGGCAGTGCTTCGTCCAAGTCTCTACTCCTTCGCTTGAAAATTGTTTCTCAAAGCACGGCTCAAGGTTTAAAGAGACAAAGAACCTGCAAGTAGTTAAAGGCTTTGTGGTTATAGCTAAAAATCCTTGTCTTCACCCAGGAGATATAAGAGTTTTGGAAGCAGTTGATGCTCCTGATTTACATCATTTATGTGATTGTCTTGTTTTCCCTCAAAAGGGTGATAGACCCCATACAAATGAAGCTTCTGGAAGCGACCTTGATGGGGACCTCTATTTTGTCACATGGGATGAGAATCTTATTCCACCCAGTAAGAGGAGTTGGAATCCAATGGAGTATTCTTCTCAAGAAAGCAAATATATGACACGTCAAGTCACTACCCGGGACATTATAGAATTTTTTGTCAGAAATATGGCAAATGAGAATTTGGGTGCAATCTGCAATGCACATGTGGTGCATGCTGATCGGAGTGACTATGGTGCCTTGGATGAGAGTTGCATAACCCTGGCCGAGTTAGCAGCCACAGCTGTTGATTTTCCAAAGACTGGGAACCTTGTCATAATGCCTTCTCATCTGAAACCAAAGCTATACCCTGATTTTATGGGGAAAGAGCTGCACCAGTCATATAAATCCAAGAAAATCCTGGGTAGGCTGTACCGGAAAATCAAAGATTCTTATGATGAAGATATCAATGTTGGTGGTTTGAACTATGTGCCTGGTGATATACCTTACGACATAGATCTTGAGGTGTCAGGATCTGCTGACTTTATTCTTGATGCATGGGAACAGAAGTGCTCTTATGATGGTCAGTTGAATGGACTGCTAGGTCAATACAAAGTGCAAAGAGAAGAAGAAGTTGTAACTGGACAGATCTGGTCCATGCCCAAATACAATAGCAGGAAGCAAGGGGAACTTAAGGAAAGGCTCAAGCATGCATACAGTGCCCTGAAGAAAGAATTTAGGCAAACTTTCGAGAAATTGAGTTCAGATATAGATGAATTAAATGATGTAGAAAAACATTTATTATATGAACAGAAGGCATCAGCCTGGTACCAGGTCACATATCATCCTGAATGGGTGAAAAGGTCCCTTGATCTTCAAGACAAATCCCCAGAGAATCAAGTGTCAGTTTGTCTTGGAAATAAGGTGATGCTGAGTTTCCCATGGATTGCAGTTGATTACCTGGCTCGCATTAAGATAAGGAAACGGGGATTTGGAAACGTTGATTCAATTAAGCCAGTTAATTCTCTGGCAAAGTTCCTATCTGAAAGGCTGTTCGTTTCCAACTTTTGTGCCTTCGATTTGAGATTTTATATGGTTAACTGGACACATTTTATACCCTGTATTGTTTTCTAG 3681 0.411 MELVGSEKDTVVTQVSIGGFDSQVKAKDLVTYLEDKIGLVYRCRLKTSGTPPESYPDFKIINTSEIGRTDDCKKVEPHAFVHFAMPESATEALNAAGRCDLFWNNQPLKVSLGPENPYFLNQRRRTTTPYKLSDVLVEIGTLVDPEKFFVAWRGPDKGVNFLVDPFDGMCKFCFNSDIAFSFKGLGKKAVIKCDFQVGFLVRDINEIRRYNDTSYRVILLHLASSPLVWYRTADDDIEDLVPFDLLDDDDPWIRTTDFTPSGALDRCNFYRISIPPRYGGKLTKAMNYLRGQRVREILLERPIKIMDEPAYGMPMSDPFFSIHYWEGITFDILFLVNAIIHKGIFNQHRLSDSFFELLRNQPKEVNVAALKHLCSYKRPVFDATKRLKTVQEWLLRNPKLYQNSKRLDDIVEVRRLIITPAKGYCLPPEVEMSNRVLRSFKEVADRFLRVTFMDEGMQTINANALNYYVAPIVKEITSNSFPQKTNIYRRVKTILEKGFYLCGRQYSFLAFSSNQLRDRSAWFFAEENNISCDNIRRWMGKFNQRNVAKCAARMGQCFSSTYATVEVAANDVNSIPDIKRNNYDFSDGIGIITPDLASEVAEKLKLDDVPSAYQIRYAGYKGVVACWPAKGDGFRLSLRPSMNKFQSSHTTLEICSWTRFQPGFLNRQIVTLLSALNVSDETFWKMQEAMVSKLNQMLVDADVAFDVLTRSCAEHGNAAAIMLSVGFSPQAEPHLRGILTSVRAAQLWGLREKARIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFKETKNLQVVKGFVVIAKNPCLHPGDIRVLEAVDAPDLHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWNPMEYSSQESKYMTRQVTTRDIIEFFVRNMANENLGAICNAHVVHADRSDYGALDESCITLAELAATAVDFPKTGNLVIMPSHLKPKLYPDFMGKELHQSYKSKKILGRLYRKIKDSYDEDINVGGLNYVPGDIPYDIDLEVSGSADFILDAWEQKCSYDGQLNGLLGQYKVQREEEVVTGQIWSMPKYNSRKQGELKERLKHAYSALKKEFRQTFEKLSSDIDELNDVEKHLLYEQKASAWYQVTYHPEWVKRSLDLQDKSPENQVSVCLGNKVMLSFPWIAVDYLARIKIRKRGFGNVDSIKPVNSLAKFLSERLFVSNFCAFDLRFYMVNWTHFIPCIVF 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1587 1226 PANTHER RNA-DEPENDENT RNA POLYMERASE 11 1194 IPR007855 GO:0003968
Glsi08g1587 1226 Pfam RNA dependent RNA polymerase 418 997 IPR007855 GO:0003968
Glsi08g1587 1226 Coils Coil 1092 1112 - -
Glsi08g1587 1226 CDD RRM_SF 15 111 - -
Glsi08g1587 1226 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 115 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1587 Glsi-ChrGlsi08 11380620 11386601 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1587 08 11380620 11386601 Glsi08g1587 08 11380620 11386601 ECH