Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1559 ATGGTTACTGCATCTGCTAGATACCCACTTGGGTTTGCCGTCTACTCCCAGAGAAAGTTGAGTGCTTTCCCTCGGAAATTGAACTCCTCAGGCTCTGAGTTTCCTCTTAATGTGGATGTTTCAAGAATTAGCCTGTGCCCAAGCTCTGCTTCCTACACAACTTCAAAGGGATTAATAGAACCCATGTGTGCACGTCCTAATGTTGATGATTTCTCCGGGGAGAAAGTCCCAACACCCATACTTGATGCAGTTGAAAATCCTCTTTGCTTGAAGAACTTATCTCTTAAGGAACTCAAGCAACTGGCTGATGAAATCCGTTTGGAATTGTCTTCAATTATGTCAGATGCAAAAATCTCAATTAAAGCAAGTATGGCAGTGGTGGAGTTGACAGTTGCAATGCACCATGTTTTTCATTCTCCGGTGGACAAGTTCTTGTGGGATGCTGGGGATCAAACATATGCACATAAGATTCTTACCGGAAGGCGATCCCTCATGAAGACAATTAGACAAAAGAATGGTCTTTCTGGTTTTACATCCCGATTTGAGAGTGAATACGATGCATTTGGTGCAGGTCATGGATGCAACAGTATTTCAGCAGGACTTGGCATGGCAGTTGCACGTGATATAAAGGGGAGGCGAGAACGTGTAGTTGCTGTTATCAGCAATTGGACAACTCTGGCCGGTCAGGTTTATGAGGCAATGAGCAATGCAGGGCATTTGGACTCAAATATGGTGGTCATTTTGAATGATAGTCGTCACTCTTTACATCCAAAAGTTGAGGAGGGACCAAAGACATCAATCAATGTGTTATCTAGCACCCTAAGCAGGCTCCAGTCCAGTAAATCCTTCCGAAAACTTAGAGAAGTTGCTAAGGTTGTTACAAAACGAATTGGTGGAGGTATGCATGAATGGGCAGCTAAAGTTGATGAATATGCACGTGGTATGATGGGTCCGCGAGGCTCCACTCTTTTTGAAGAGCTTGGGTTGTACTACATAGGCCCTGTGGATGGACACAACCTTGAAGATCTAATTTGTGTTCTAGAAGGAGTAGCATCTCTTGATTCAATGGGCCCTGTCCTGGTTCATGTAATAACTGATGAAAATCACAGAGCCGAATATAATCAGAAAGTTGATATAACAGACAGGCAGCAGGGTGGTTCTGTCAACTTAAATTCATTGCATCATGCTATTCAACCTCGAACATATAGCGATTGCTTTGTGGAAACGTTGGTTATGGAAGCAGAGAAAGACAAGGATATTGTGGTAGTTCATGGAGGAATCATGATGGAACCATCAATGAAACTGTTTCAAGAAAAAATGCCAGATAGGTTTTTTGATGTGGGGATGGCTGAGCAACATGCAGTTACATTTGCTTCTGGTTTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTTCTACAAAGAGCATATGACCAGGTGATTCATGATGTTGATCGACAGAAAATTCCAGTTCGCTTTGTCATTACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTTCAATGTGGAGCATTTGATATAACCTTCATGTCATGCTTGCCAAACATGATTGTCATGGCACCATCTGATGAGGTTGAACTCATGCACATGGTGTCTACTGCTAGTCATGTCAATGATCGGCCAATTTGCTTCCGGTATCCAAGGGGTGCTGTAGTGGGGAACAACTACACTGTATGCAATGGAATACCCATTGAGATTGGAAAGGGGAGAGTCCTTGTTGAAGGTAAAGAAGTTGCTTTACTGGGATATGGATCAATGGTTCAGCACTGCCTAAAAGCTCAAACTCTTCTTGCAAAGCTTGGTATTGAGGTGACAGTTGCTGATGCAAGGTTCTGCAAGCCCCTGGATATCAAGCTTCTCAGGCAGCTTTGTAAACACCATTCTTTCCTGATTACCGTTGAAGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGCTCAGTTTATTGCTCTTGATGGACAGCTCGATGGAAGGATTAAGTGGCGACCTATAGTCTTACCAGACAGCTACATAGAGCATGCTTCACCAAATGAGCAGCTTGATCAGGCAGGGCTGACTGGACGTCACATTGCTGCCACGGCACTGAATTTGCTGGGTCGTACCCGAGAAGCCCTCCTTTTTACATGTTCATGA 2166 0.4377 MVTASARYPLGFAVYSQRKLSAFPRKLNSSGSEFPLNVDVSRISLCPSSASYTTSKGLIEPMCARPNVDDFSGEKVPTPILDAVENPLCLKNLSLKELKQLADEIRLELSSIMSDAKISIKASMAVVELTVAMHHVFHSPVDKFLWDAGDQTYAHKILTGRRSLMKTIRQKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRRERVVAVISNWTTLAGQVYEAMSNAGHLDSNMVVILNDSRHSLHPKVEEGPKTSINVLSSTLSRLQSSKSFRKLREVAKVVTKRIGGGMHEWAAKVDEYARGMMGPRGSTLFEELGLYYIGPVDGHNLEDLICVLEGVASLDSMGPVLVHVITDENHRAEYNQKVDITDRQQGGSVNLNSLHHAIQPRTYSDCFVETLVMEAEKDKDIVVVHGGIMMEPSMKLFQEKMPDRFFDVGMAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVIHDVDRQKIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVSTASHVNDRPICFRYPRGAVVGNNYTVCNGIPIEIGKGRVLVEGKEVALLGYGSMVQHCLKAQTLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGQLDGRIKWRPIVLPDSYIEHASPNEQLDQAGLTGRHIAATALNLLGRTREALLFTCS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1559 721 SUPERFAMILY TK C-terminal domain-like 573 709 IPR009014 GO:0003824
Glsi08g1559 721 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 578 710 - -
Glsi08g1559 721 Gene3D - 578 709 IPR009014 GO:0003824
Glsi08g1559 721 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 78 461 IPR029061 -
Glsi08g1559 721 Pfam Transketolase, C-terminal domain 578 701 IPR033248 -
Glsi08g1559 721 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 54 716 IPR005477 GO:0008661|GO:0016114
Glsi08g1559 721 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 84 709 IPR005477 GO:0008661|GO:0016114
Glsi08g1559 721 Pfam Transketolase, pyrimidine binding domain 401 561 IPR005475 -
Glsi08g1559 721 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 81 365 IPR005477 GO:0008661|GO:0016114
Glsi08g1559 721 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 399 567 - -
Glsi08g1559 721 Coils Coil 95 115 - -
Glsi08g1559 721 CDD TPP_DXS 122 365 IPR005477 GO:0008661|GO:0016114
Glsi08g1559 721 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 399 587 IPR029061 -
Glsi08g1559 721 Gene3D - 74 370 - -
Glsi08g1559 721 SMART Transket_pyr_3 400 565 IPR005475 -
Glsi08g1559 721 CDD TPP_PYR_DXS_TK_like 406 559 - -
Glsi08g1559 721 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 80 710 IPR005477 GO:0008661|GO:0016114
Glsi08g1559 721 Gene3D - 400 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1559 Glsi-ChrGlsi08 11226168 11232225 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1559 08 11226168 11232225 Glsi08g1559 08 11226168 11232225 ECH