Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1236 ATGAGCAAATCGAGGATTATGGAGCAGTTTAATAACGATGATCTTGAGGACGTAGTCGGTGTCGATTATCGTATCCCTGATTTTGAAGACGATGATCCTTTCGTTGACAATGACCCTCATAGTAATAGTGATATTGATTCTCTGGACTCGGACTTTGAAGATGATTTTGAAATGAGTAAGTCGAAGACTGATACTTCTGCTTTGGAAGCTAGAAATGGGAAAGATATCCAGGGAATTCCTTGGGAGAGGCTTAATTATACCAGAGACAACTACCGGGAAACTCGATTGAGGCAATACAAGAACTATGAGAACCTCTCACGCTCTCGCGAGGAGATTGAAAAGGAGTGCCTGGAAGTGCAGAAAGGGATGACCTTCTATGACTTCCAGTTCAATACGAGGATTGTCAAATCAACAGTTGTGCATTTTCAGCTGAGGAATTTGTTATGGGCAACATCGAAGCATGATGTATACCTTATGCAAAACTACTCTGTGATGCATTGGTCCTCTTTACGCCAAAGGGGTAAAGAAGTACTTAATGTGGCGAAACCAATTGTTCCAACCCTTAAGCGCCCTGAATTTTGGGTTCACCCTGTCTCCAGAGTACAAATAAGCACCATGACTGTTAAGGAAAATTTGATGGTAGCAGGTGGTTTCCAGGGTGAGCTTATTTGCAAGCATCTGAATCATTCTGGAGTTGCATTCTGCAGTAAAAGAACTACCGATGATAATGCTATAACCAATGCGGTGGATGTTTACCGCAATCAGAATGGGTCGTTGAGGGTCATGACAGCAAATAATGATGCCCAAGTTCGGGTTTTTGATGCGGAGAGTTTTGCTCCTCTTGGTTGTTTCAAATATGATTGGTCTGTTAATAATACTACTGTTAGTCCAGATGGTAAGTTGTTAGCTGTTCTTGGGGATAGTGTCGAGTGCTTGATAGCTGATGCTAACACCGGAAAGGTTGAAGGGAGCCTAGGAGGACACTTGGACTATTCTTTTGCCTCTGCTTGGCACCCAGATGGACGATATTTGGCTACTGGGAATCAGGACACAACATGTAGGTTGTGGGACATTAGAAATCTTTCACAGTCAGTGGCTGTACTGAAGGGAAGAATGGGTGCAATAAGAGCCTTAAGGTTCAGTTCCGATGGACGATTTTTAGCCATGGCTGAGCCCGCAGACTTCGTCCATATTTTTGACTCACAGTCTGGTTATGTGCAAGGACAAGAGATAGATCTATTTGGTGAGATAGCTGGAATATCATTTAGCCCGGACTCAGAGGCACTATTTGTTGGGATTGCTGACAGCACCTATGGTAGCTTGTTAGAGTTCAACAGAAAACATTGCAACCAACATTTAGACTCCATTTTTTAG 1374 0.4301 MSKSRIMEQFNNDDLEDVVGVDYRIPDFEDDDPFVDNDPHSNSDIDSLDSDFEDDFEMSKSKTDTSALEARNGKDIQGIPWERLNYTRDNYRETRLRQYKNYENLSRSREEIEKECLEVQKGMTFYDFQFNTRIVKSTVVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLRQRGKEVLNVAKPIVPTLKRPEFWVHPVSRVQISTMTVKENLMVAGGFQGELICKHLNHSGVAFCSKRTTDDNAITNAVDVYRNQNGSLRVMTANNDAQVRVFDAESFAPLGCFKYDWSVNNTTVSPDGKLLAVLGDSVECLIADANTGKVEGSLGGHLDYSFASAWHPDGRYLATGNQDTTCRLWDIRNLSQSVAVLKGRMGAIRALRFSSDGRFLAMAEPADFVHIFDSQSGYVQGQEIDLFGEIAGISFSPDSEALFVGIADSTYGSLLEFNRKHCNQHLDSIF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1236 457 SMART WD40_4 219 274 IPR001680 GO:0005515
Glsi08g1236 457 SMART WD40_4 361 400 IPR001680 GO:0005515
Glsi08g1236 457 SMART WD40_4 318 357 IPR001680 GO:0005515
Glsi08g1236 457 Gene3D - 209 455 IPR015943 GO:0005515
Glsi08g1236 457 Pfam WD domain, G-beta repeat 322 357 IPR001680 GO:0005515
Glsi08g1236 457 ProSitePatterns Trp-Asp (WD) repeats signature. 344 358 IPR019775 -
Glsi08g1236 457 FunFam WD-40 repeat family protein 238 454 - -
Glsi08g1236 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 360 - -
Glsi08g1236 457 Coils Coil 102 122 - -
Glsi08g1236 457 MobiDBLite consensus disorder prediction 26 52 - -
Glsi08g1236 457 MobiDBLite consensus disorder prediction 26 47 - -
Glsi08g1236 457 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 32 454 - -
Glsi08g1236 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 366 IPR001680 GO:0005515
Glsi08g1236 457 SUPERFAMILY WD40 repeat-like 184 437 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1236 Glsi-ChrGlsi08 8976752 8983157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1236 244 437 Miscellaneous Gene Families AT5G08390 26.531 2.42e-12 67.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1236 08 8976752 8983157 Glsi08g1236 08 8976752 8983157 ECH