Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1235 ATGGTGTGGTCTCCCATTTTGTTTGTCCCCTTCCTTCTGCTCACTCAACAGCTCGTCAATGGCGAGTTAACTCAGCCCCCTTATGCTTGTGACTGGTCCAATCCAGCCACCAGATCCTACCAGTTTTGCAATCCTAAGCTTCCCATCCGTCAAAGAGCCAAGGACCTTGTCTCCCGCCTCACATTGGACGAGAAGATCGCCCAACTTGTCGACATCGCCCCTCCCATTCCCCGACTCGGTATCCCTGCATACCTGTGGTGGAATGAAGCATTACATGGAGTCGGCTCGGTTGGACGTGGCATCCGATTTAATGGCACCATTTCATCCGCAACTAACTTCCCTCAAGTTATCCTCACTGCTGCTACCTTCGACTCCCAACTCTGGTACCGAATCGGTCAGGCCATTGGGACGGAAGCCAGAGCAATCTATAATGCTGGGCAAGCAATGGGTATGACATTTTGGGCCCCGAACATTAACATCTTCAGGGACCCAAGATGGGGGAGAGGACAAGAGACAGCAGGGGAAGACCCACTGATTACTGCCAAGTATGCGGTAGCATTTGTGAGGGGGCTTCAAGGCGATTCCTTCGAAGGAGGGAAAACGAGACGTCGTCTTCAAGCTTCAGCTTGTTGCAAGCATTTTACTGCCTATGATTTGGATCACTGGAAGGGGGTAGATCGCTTCATTTTTGATGCTCGCGTCACTTTGCAAGATTTAGCGGACACATATCAGCCTCCATTCCAGAGTTGCATAGAGAAAGGACGAGCTAGTGGGATAATGTGTGCTTACAACCGTGTAAATGGGGTTCCAAACTGCGCAGATTTCAATCTCTTAACTAAACTCGCCAGAAAACAATGGGGTTTTAATGGGTATATCACTTCAGATTGTGAGGCAGTATCTATCATTCATGATTATCAAGGATACGCCAAAACACCGGAAGATGCCGTAGCCGATGTCCTTCGGGCCGGTATGGACGTAGAGTGTGGCAAATACATGACGGAGCATGCTAAATCAGCAGTGTTGCAGAGAAAATTAGCAATATCTCAAGTAGACCGTGCCCTTCACAACTTGTTTTCCATTAGAATGAGGCTGGGTTTATTTGATGGAAATCCAGCGAAACTCCAATTCGGTATGATCGGTACCAGTCAAGTGTGTTCCAAAGAGCACCAGTATTTATCTCTTGAAGCTGCAAGAAATGGCATAGTCCTTTTGAAGAACAGTGCAAGACTTCTCCCACTCCCAAAAACAAACCCCACTATTTCCCTTGCGGTCATAGGCCCTAACGCCAATACTTCCTATACTCTCTTAGGAAACTATCCTGGCCCTCCCTGTAAATCCTCTACGCTATTGCAAGGCTTTCAGCACTATGTTAAGAGCACAATTTATCACCCTGGTTGTGATGGTGGAGTCCAGTGTCCCTCGGCTCAAATAGACCAAGCTGTGGAAATCGCTAAAAAGGTGGATTATGTGGTTCTGATTATGGGATTGGATCAAAGTGAAGAGAGGGAAGAACTTGATCGTATTCATCTAGACTTACCAGGCAAGCAACTGGAACTCGTTCACAGCGTTGCCAAAGCTGCTAAAAGACCAGTTATTTTGGTGCTCATTTGTGGAGGCCCTGTTGATATTACTTCAGCTAAGGATGTCAACAAAATTGGAGGCATTTTCTGGGCTGGTTATCCTGGAGAATTTGGAGGAATTGCTCTTGCTCAGATTATCTTCGGCGACCACAACCCAGGAGGAAGACTGCCAATTACTTGGTACCCAAAAGATTTCACAAGAGTGCCGATGACAGACATGAGGATGCGAGCTGATCCATCATCTGGCTATCCCGGAAGAACTTACCGATTTTATACAGGTCCAAAGGTGTATGAATTCGGCTACGGCCTAAGCTACTCAAAATATTCCTATGAGTTCGTCTCCGTCACAAACAAGAAGCTTCACTTCAATCAATCATTGACTCATTTGATGGTTGAGAATTCGGAAACCATCCATTACAAATTAGTTTCAGAATTGGGTAAAGAAATTTGCCAAAGCATGTCTGTCTCTGTCACTGTGGGGGTTAAAAATCATGGAAATATGGTGGGGAAGCATCCAGTATTGCTATTTATAAGGCAGGCAAAACAGAGAAATGGAAATCCGATCAAACAGTTGGTGGGTTTTCAGAGTGTGACGTTAGATGCAGGGGAAAGGGCTCAAGTTGGATTTGAGCTAAGCCCTTGTGAGCACATTAGCCAAGCAAACGAGGCTGGTTCGAAGGTAATTGAAGAAGGGTCTTATTTGCTGCTTGTTGGGGATGAGGAGTACCCAATCGATATATCAGTATCTGGCGGTACATATTGA 2343 0.4627 MVWSPILFVPFLLLTQQLVNGELTQPPYACDWSNPATRSYQFCNPKLPIRQRAKDLVSRLTLDEKIAQLVDIAPPIPRLGIPAYLWWNEALHGVGSVGRGIRFNGTISSATNFPQVILTAATFDSQLWYRIGQAIGTEARAIYNAGQAMGMTFWAPNINIFRDPRWGRGQETAGEDPLITAKYAVAFVRGLQGDSFEGGKTRRRLQASACCKHFTAYDLDHWKGVDRFIFDARVTLQDLADTYQPPFQSCIEKGRASGIMCAYNRVNGVPNCADFNLLTKLARKQWGFNGYITSDCEAVSIIHDYQGYAKTPEDAVADVLRAGMDVECGKYMTEHAKSAVLQRKLAISQVDRALHNLFSIRMRLGLFDGNPAKLQFGMIGTSQVCSKEHQYLSLEAARNGIVLLKNSARLLPLPKTNPTISLAVIGPNANTSYTLLGNYPGPPCKSSTLLQGFQHYVKSTIYHPGCDGGVQCPSAQIDQAVEIAKKVDYVVLIMGLDQSEEREELDRIHLDLPGKQLELVHSVAKAAKRPVILVLICGGPVDITSAKDVNKIGGIFWAGYPGEFGGIALAQIIFGDHNPGGRLPITWYPKDFTRVPMTDMRMRADPSSGYPGRTYRFYTGPKVYEFGYGLSYSKYSYEFVSVTNKKLHFNQSLTHLMVENSETIHYKLVSELGKEICQSMSVSVTVGVKNHGNMVGKHPVLLFIRQAKQRNGNPIKQLVGFQSVTLDAGERAQVGFELSPCEHISQANEAGSKVIEEGSYLLLVGDEEYPIDISVSGGTY 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1235 780 Gene3D - 386 633 IPR036881 GO:0004553|GO:0005975
Glsi08g1235 780 PRINTS Glycosyl hydrolase family 3 signature 113 132 IPR001764 GO:0004553|GO:0005975
Glsi08g1235 780 PRINTS Glycosyl hydrolase family 3 signature 281 299 IPR001764 GO:0004553|GO:0005975
Glsi08g1235 780 PRINTS Glycosyl hydrolase family 3 signature 207 223 IPR001764 GO:0004553|GO:0005975
Glsi08g1235 780 Pfam Fibronectin type III-like domain 700 766 IPR026891 -
Glsi08g1235 780 FunFam probable beta-D-xylosidase 2 386 633 - -
Glsi08g1235 780 SUPERFAMILY (Trans)glycosidases 40 399 IPR017853 -
Glsi08g1235 780 SMART Fn3_like_2 698 768 IPR026891 -
Glsi08g1235 780 PANTHER SUGAR HYDROLASE-RELATED 23 771 IPR044993 GO:0009044|GO:0045493
Glsi08g1235 780 Pfam Glycosyl hydrolase family 3 C-terminal domain 401 632 IPR002772 GO:0004553|GO:0005975
Glsi08g1235 780 Gene3D Immunoglobulins 661 775 IPR013783 -
Glsi08g1235 780 Gene3D - 52 375 IPR036962 GO:0004553|GO:0005975
Glsi08g1235 780 FunFam probable beta-D-xylosidase 7 52 373 - -
Glsi08g1235 780 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 401 635 IPR036881 GO:0004553|GO:0005975
Glsi08g1235 780 Pfam Glycosyl hydrolase family 3 N terminal domain 78 356 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1235 Glsi-ChrGlsi08 8963957 8969285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1235 18 775 Glycoside Hydrolase AT1G78060 64.698 0.0 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1235 08 8963957 8969285 Glsi08g1235 08 8963957 8969285 ECH