Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1208 ATGGATTTATCGGGTGCTCAGCCGGGTCTGTCTCTTGGATTAAACGCGCAGATTTCGTCATCGGCTTTGGCAGGCCCTGTTAGTGATAATTCATTTTCCTTTCAACTGAATTCGAGCTTTCGTAGTTCCTCGAATCCAACTCTTTCTGTTCCGTTGCAGTTACTCGAGGAGAAAGACGAGAAGGTTAAGATCAAATACGGAGAAGAAGAAAATGATGACGACGAAGAAGAAGACGAGGAAGAAGGAGTGGAAGATGAAACCATCAACTTTATGGGTCGGCCTTTGTGTGTGAAGAGGCAATTAGAGGCACAGTCGAATTTCTCTTCGAAACGGCTTGCGGTGGATTCAGGCCCTGAGGCAAGGCGAGCTTCAGTTCAGGCTTGGGGGAACCAGCCACTGGAGGTAGCAGACCCCGAGATTCATAGAATAATGGAGAAGGAAAAGCGGAGACAGTTCAAAGGAATCGAATTGATTGCTTCTGAGAATTTTGTGTGCAGAGCTGTCATGGAAGCTCTGGGAAGCCATTTAACGAACAAGTATTCTGAGGGAATGCCTGGATTTAAATACTACACAGGGAATCAGCATATTGATCAGATGGAATTGCTTTGCTGTAAGCGTGCATTGGTGGCCTTTGATCTTCATCCCAGCAAGTGGGGGGTGAATGTTCAGCCTTACTCATGTACTTCTGCGAACTTTGCGGTGTATACTGGTCTCTTACATCCGGGGGATCGAATCATGGGTCTGGATTTGCCATCCGGTGGGCATTTGAGTCATGGATATTATGCTCACAGCGGAAAGAAAGTTTCTGCTGCATCGATATTCTTTGAAACTCTCCCTTACAGAGTCAATCCTCAAACAGGCTACGTAGACTATGAAAAGCTCGAAGAAAAAGCACTCGATTATCGCCCCAAAATACTGATATGCGGTGGGAGTTCGTATCCCAGAGAATGGGATTACGCAAGGTTTAGGCAGATTGCTGATAAATGTGGGGCAGTTTTAATGTGTGACATGGCTCATATTAGCGGTCTTGTGGCAGCTAAGGAAGCTTCTAGCCCATTTGATTACTGTGATATTGTCACTTCAACAACCCACAAAAGTCTCCGAGGTCCAAGGGGAGGTATCATCTTTTATAGAAGAGGTACTAAACCAAGGAAGCAAGGCTGGGCTATTAATCATGGAGATGATAGTAATTATGACTTTGAGGAGAAGATAAACTTTGCTTTATATCCATCCTTACAAGGAGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCCTTAAAACAAGTTGCGACTCCGGAGTACAAAGTATATATGCAACAGGTGAAGAAAAATGCACAGGCGTTAGCATCCGCTTTGTTGAAAAGAAAATGCAGATTGGTGACTGATGGTACTGACAATCATTTGTTGCTTTGGGATTTAACTGCACTCGGCTTAATTGATAGGAACTATGAGAAGGTCTGCGAGGCGTGTAACATCACACTCAACAAATGTGCCATTTATGGTTCTATTTCACCCGGAGGAGTGAGAATTGGTACTCCTGCTATGACATCAAGAGGTTGCTTAGAGGATGATTTTGAGACCATAGCTGATTTTCTTCTGAGGGCGGCTCAGATTACCAGCAATTTACAGAGGGAACATGGGAAATCTTACAAAGATTTCCTTAAAGGTCTTCAGAATAATAAAGATATTGTTGAGCTCAGAAATCAGGTTGAGACGTTTGCTTCTCAGCTTGCAATGCCAGCATGCGATATTTGA 1761 0.4401 MDLSGAQPGLSLGLNAQISSSALAGPVSDNSFSFQLNSSFRSSSNPTLSVPLQLLEEKDEKVKIKYGEEENDDDEEEDEEEGVEDETINFMGRPLCVKRQLEAQSNFSSKRLAVDSGPEARRASVQAWGNQPLEVADPEIHRIMEKEKRRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGFKYYTGNQHIDQMELLCCKRALVAFDLHPSKWGVNVQPYSCTSANFAVYTGLLHPGDRIMGLDLPSGGHLSHGYYAHSGKKVSAASIFFETLPYRVNPQTGYVDYEKLEEKALDYRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKEASSPFDYCDIVTSTTHKSLRGPRGGIIFYRRGTKPRKQGWAINHGDDSNYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVATPEYKVYMQQVKKNAQALASALLKRKCRLVTDGTDNHLLLWDLTALGLIDRNYEKVCEACNITLNKCAIYGSISPGGVRIGTPAMTSRGCLEDDFETIADFLLRAAQITSNLQREHGKSYKDFLKGLQNNKDIVELRNQVETFASQLAMPACDI 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1208 586 MobiDBLite consensus disorder prediction 69 85 - -
Glsi08g1208 586 FunFam Serine hydroxymethyltransferase 162 380 - -
Glsi08g1208 586 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 357 373 IPR019798 GO:0030170
Glsi08g1208 586 Gene3D - 162 441 IPR015421 GO:0003824
Glsi08g1208 586 MobiDBLite consensus disorder prediction 61 89 - -
Glsi08g1208 586 Hamap Serine hydroxymethyltransferase [glyA]. 132 583 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Glsi08g1208 586 Gene3D Aspartate Aminotransferase, domain 1 137 582 IPR015422 GO:0003824
Glsi08g1208 586 MobiDBLite consensus disorder prediction 35 51 - -
Glsi08g1208 586 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 125 584 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Glsi08g1208 586 MobiDBLite consensus disorder prediction 35 54 - -
Glsi08g1208 586 SUPERFAMILY PLP-dependent transferases 128 582 IPR015424 -
Glsi08g1208 586 CDD SHMT 137 544 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Glsi08g1208 586 Pfam Serine hydroxymethyltransferase 133 533 IPR039429 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1208 Glsi-ChrGlsi08 8771638 8775297 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1208 08 8771638 8775297 Glsi08g1208 08 8771638 8775297 ECH