Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1199 ATGGAAAACGCTGATGTTTTCTTGGGCTTACAGGACTTCCTGGAGCGGATGCGCCAGCCCTCCGCTGCCGATTTCGTCAAAGCAATTAAAAGTTTTATTGTGTCGTTTTCAAATACTGCTCCTGATCCAGAGAGGGACAGTGCTGCAGTACAGGAGTTCTTTGCTAATATGGAAGCGGCTTTCAGGGCTCATCCACTTTGGGCCGGCTGCTCAGAGGAGGAGCTGGATAGTGCCGGTGAAGGGCTGGAGAAGTATGTCATGACCAAGTTATTTACCCGTGTATTTGCTTCACTTCCTGATGATGTGAAACTTGATAACCAACTCTCTGAAAAGATGGCTTTGATTCAACAATTTATTCAACCAGAAAATTTAGACATCAAGCCAACCTTTCAAAATGAAACATCATGGTTGCTCGCACAGAAAGAATTAAAGAAGATCAACATGTACAAGGCACCAAGAGACAAATTTGTGTGTATCCTGAATTGTTGCAAGGTCATCAGTAACTTGTTGATTAATGCTTCTGTGGCTTCAAATGAGAATCCCCCAGGGGCTGATGAATTTCTTCCTGTGCTAATTTATGTTACTATAAAGGCGAACCCTCCACAATTGCACTCAAATCTACTGTACATACAAAGGTTTAGACGTCAATCTCGATTGGTTGCAGAAGCAGCATACTTTTTTACGAACATGCTCTCTTCTGAGTCCTTCATTTCGAACATTGATGCAAAAGCCCTCTCAATGGATGAAACTGAGTTTGATAGAAACATAGAATCCGCTCGTGCTCTTCTTTCTGGGCTTTCAACTGATTTGCAAGATCACTCCACTTTAACTGACCAAAATTCTGGACACCTTTCAATAACAGAACCTATTAAGCACATAAATAAGGCTTTGAACGATATTAAGAACCCTGCATTACGAACTACATCATCTGAAGCAAAACCTGAAAGCAAGAAAGAAATTACTGATGATCTGTCATCTATCAGCAAAGTTCCATCCCTCTCGGATTTGGAGACTAAAGGTGCAAGTGTGCTTTTAAAGGAGGATCAGGTGAATGAAGTTTTCAGGGAGTATCCGTATTTGTTTGCTCGTGTTGGTGACCTTACAGTCAGTGATGTGGAGGACCTGCTAAATAATTACAAACAACTAGTTTTCAAGTACGTATGTCTTTCCAAAGGTTTAGGGGTCTCTCCTACATATGTTCCATCCAATACACAAAATCATGTTCAAGACCATGCTGAAACGGCAATAGAGTCTTCATGTAGTGGACCTCTAGATGCCAATGATAGGTCAGAAAAATCTGCTGATAGGACAAAGGATAGTTCATACGAGATTTCACCTTCTGAAGATAAAAATAATGAATCTGATTTGCCACAGGATGTGGCAGTTGCAACTCAGGTTGGGGCCAATATAGAATCTTCTAACTGA 1425 0.4119 MENADVFLGLQDFLERMRQPSAADFVKAIKSFIVSFSNTAPDPERDSAAVQEFFANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASLPDDVKLDNQLSEKMALIQQFIQPENLDIKPTFQNETSWLLAQKELKKINMYKAPRDKFVCILNCCKVISNLLINASVASNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRRQSRLVAEAAYFFTNMLSSESFISNIDAKALSMDETEFDRNIESARALLSGLSTDLQDHSTLTDQNSGHLSITEPIKHINKALNDIKNPALRTTSSEAKPESKKEITDDLSSISKVPSLSDLETKGASVLLKEDQVNEVFREYPYLFARVGDLTVSDVEDLLNNYKQLVFKYVCLSKGLGVSPTYVPSNTQNHVQDHAETAIESSCSGPLDANDRSEKSADRTKDSSYEISPSEDKNNESDLPQDVAVATQVGANIESSN 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1199 474 Gene3D VPS9 domain 99 265 IPR037191 -
Glsi08g1199 474 MobiDBLite consensus disorder prediction 428 455 - -
Glsi08g1199 474 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Glsi08g1199 474 MobiDBLite consensus disorder prediction 304 323 - -
Glsi08g1199 474 Gene3D - 17 97 - -
Glsi08g1199 474 SMART vps9_2 135 254 IPR003123 -
Glsi08g1199 474 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Glsi08g1199 474 FunFam Vacuolar protein sorting-associated protein 9A 17 97 - -
Glsi08g1199 474 FunFam Vacuolar protein sorting-associated protein 9A 99 265 - -
Glsi08g1199 474 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Glsi08g1199 474 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Glsi08g1199 474 PANTHER RAB GDP/GTP EXCHANGE FACTOR 7 386 IPR045046 GO:0005085|GO:0016192
Glsi08g1199 474 MobiDBLite consensus disorder prediction 418 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1199 Glsi-ChrGlsi08 8731895 8736528 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1199 08 8731895 8736528 Glsi08g1199 08 8731895 8736528 ECH