Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1095 ATGGAATTGCCGGAGTGCCCGGTGTGCCTTCAAACCTACAACGACGAGAGCACAATTCCTAGGGTACTTGCCTGTGGCCACTCGGTTTGTGAAGCTTGCCTTATTGAACTCCCGCTGCGATACCCCGACACCATTCGCTGCCCTGCATGTACCCAACTCGTCAAGTACCCAACCCAGCAAGGCCCCTCTGCTCTTCCCAAGAACATCGACCTCCTCAGACTCTGTCTCGAATACCCATCTTCTTCTTCTGATGGCTCTCAGAAATCGAAGCAGCATTCTGCAAAGCATGGTGATGATCACTCTGAAGTTTGTATTCGGTTCTGGTCGGATGAATTGTATGCCACCTGGAAGGATTGGGTTCTTCCCCAGGACGTCGTTTCGATTGAGTCCAAACCCGGCGGGCACGAAGGTCCTGGTCTTGGCTTTGTTCTACGACGGCGATTTGATTCAATTTCTTCGTTGAAAGGTCGTGTTTGCATCAAAGATAAACAAAACTTGACCCTTGCTTCGATTGCTTCTTTACCGCCTGTGAATCATTCTAAGTTCAAGTTTAGTTATTTTGCCCGAATTATAAAGTGTTTGGAGGGGATGAAAGAGGTTGAGAGGGAAGAATTAGCTTTGATTCTCAAAGTTTCCATGAAACAGAGTAGGGTATGTAAAGTTTATGGCTTGTGGAGTGACTTAGTTGATGGGCATCTATTTTTAGTGAGTGCGAGACCCAATAGTAGTCTTTCTGAGAAGTTTACGGAGTTGAGAAATGGGTTTGTCGGTCTGGCTGCAGATGGTTTGAGTAGAGATGAAGTTGTCAGTTTTGCGATGATAGGTATGGGTATTTGTGAAGCGTTGATCACTTTACACACAGAAGGTTTGGTTGTCGGCTATTTTGAACTTGCTTGCTTCTGTTTCGATGAGCTTGGCGGCATTTGTTTTGATTTGAATGAGGCATTAGCGATGGGAAAGAAGATTCGTCGTACCATAATAAATGCTATTTCTAGCGGCACTAGTGATAGGGATAAACGAGAAGTAATTTGTAAGGATGTCTTGAAAAGTGAGGTTTCTATAAGCCCAGAGCTTATGGTTGAGTTATTGCAGAAGGAGACTAGTATTCAAGAGAGTGGAGACACAAGATTCTCCATTGGACATGGCTCTGATGTATGGTCATTGGCTTATGTACTGCTGCGGCTTCTCTTTGGTGATGTACTCCCTCAGTATACCTTGGAAATGAATGAAGAGAAGAAGGGCTTTGACTTTTTGGCTAGTTACATTTGTTGGGTGGAGAAAGTTAGTTCTTTTTTGGAAGATAAATTGGGATCAGAATATCTATTGTTGAGGCAGACTCTTTGTAAGTGTTTGGCAATAAATCCAGGGAGTCGCCCAGATGTGGCAGATGTGAGGAAATGCATTTCCAATATGTTAATTAAACCCCAATTTGATGTTCTGCGCACCTCTGAGGTTGCAATAATTAGGAACCGCATGGATTGCTGCTTGATTCTTGGGGAGTTGTGTCAGATGTCTCAAGAAAGCTCAAAAGCACAGAGAGAATGTGAGTTGGGGGACAAAAAAGACGGTGGTCGACCAGATCTTGTTCAAGATGGGAAGGACAAATCTGATGAAGATTTTGTTGAAGGCCTATCTAAGGGAATGACTGAAGTTAAAGATTTGCGAGGTCATCTTGATTGTATCACTGGGTTAGCTGTTGGAGGGGGATTTCTGTTTAGCTCCTCATTTGATAAAACCATCCATGTATGGTCCTTGCAGGACTTTTCTCATTTACACACCTTTAGAGGTCACGAGAATAAAGTCATGGCTCTGGTTTATGTAGATGAAGAAGAGCCATTGATCGTAAGTGGTGACAGTGGAGGGGGAATTTTTATCTGGGGAATAACTGCTCCTCTTGGGCAAGATCCATTGAGGAAATGGTATGAGCAGAAGGATTGGCGCTTCAGTGGTATTCATTCCTTGGTTGTTTCCAGAAATCTTTGCCTCTACACTGGAAGTGGCGATAGATCAATAAAAGCTTGGTCAATGAAGGATGGAACTTTGATATGCACGATGAATGGTCATAGATCTGTAGTTTCCACACTTGCAATATGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGAACCATTAGGTTGTGGAGTCTTATTGATCACAGCCTGTTGACAGTGCTGGGGGAAGATATGCCTGGAGACATGAAGTCTGTCCTATCTATTACCGCTGATAGACATTTGCTTGTTGCAGCACATGAGAATGGATGCATAAAGGTCTGGAGAAATGATGTGTTCATGAATTCCAAAAAGTTACATAGTGGTGCAATTTTTGCTATTAGTTTGCAGGAAAAATGCCTCTATACAGGAGGGTGGGACAAAAATGTTAATATACAGGAATTATCAGGAGATGAGTTTCAACTGGTTGTTGAATCAATCGGATATATTCCTTGCAGTTCTGTTGTAACCGCTATATTATGCTCGCAAGGAAAACTTTTTGTTGGATATGCTGACAAGTCTATCAAGGTTTATCGCGTGACTAGGTAG 2538 0.4307 MELPECPVCLQTYNDESTIPRVLACGHSVCEACLIELPLRYPDTIRCPACTQLVKYPTQQGPSALPKNIDLLRLCLEYPSSSSDGSQKSKQHSAKHGDDHSEVCIRFWSDELYATWKDWVLPQDVVSIESKPGGHEGPGLGFVLRRRFDSISSLKGRVCIKDKQNLTLASIASLPPVNHSKFKFSYFARIIKCLEGMKEVEREELALILKVSMKQSRVCKVYGLWSDLVDGHLFLVSARPNSSLSEKFTELRNGFVGLAADGLSRDEVVSFAMIGMGICEALITLHTEGLVVGYFELACFCFDELGGICFDLNEALAMGKKIRRTIINAISSGTSDRDKREVICKDVLKSEVSISPELMVELLQKETSIQESGDTRFSIGHGSDVWSLAYVLLRLLFGDVLPQYTLEMNEEKKGFDFLASYICWVEKVSSFLEDKLGSEYLLLRQTLCKCLAINPGSRPDVADVRKCISNMLIKPQFDVLRTSEVAIIRNRMDCCLILGELCQMSQESSKAQRECELGDKKDGGRPDLVQDGKDKSDEDFVEGLSKGMTEVKDLRGHLDCITGLAVGGGFLFSSSFDKTIHVWSLQDFSHLHTFRGHENKVMALVYVDEEEPLIVSGDSGGGIFIWGITAPLGQDPLRKWYEQKDWRFSGIHSLVVSRNLCLYTGSGDRSIKAWSMKDGTLICTMNGHRSVVSTLAICDEVLYSGSWDGTIRLWSLIDHSLLTVLGEDMPGDMKSVLSITADRHLLVAAHENGCIKVWRNDVFMNSKKLHSGAIFAISLQEKCLYTGGWDKNVNIQELSGDEFQLVVESIGYIPCSSVVTAILCSQGKLFVGYADKSIKVYRVTR 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1095 845 CDD RING-HC_TRIM32_C-VII 4 53 - -
Glsi08g1095 845 PRINTS G protein beta WD-40 repeat signature 571 585 IPR020472 -
Glsi08g1095 845 PRINTS G protein beta WD-40 repeat signature 702 716 IPR020472 -
Glsi08g1095 845 PRINTS G protein beta WD-40 repeat signature 662 676 IPR020472 -
Glsi08g1095 845 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Glsi08g1095 845 ProSiteProfiles Trp-Asp (WD) repeats profile. 554 593 IPR001680 GO:0005515
Glsi08g1095 845 Gene3D - 529 634 IPR015943 GO:0005515
Glsi08g1095 845 Gene3D - 635 845 IPR015943 GO:0005515
Glsi08g1095 845 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Glsi08g1095 845 SUPERFAMILY RING/U-box 5 59 - -
Glsi08g1095 845 PANTHER - 1 842 IPR044715 -
Glsi08g1095 845 SMART WD40_4 678 715 IPR001680 GO:0005515
Glsi08g1095 845 SMART WD40_4 547 584 IPR001680 GO:0005515
Glsi08g1095 845 SMART WD40_4 718 759 IPR001680 GO:0005515
Glsi08g1095 845 SMART WD40_4 633 675 IPR001680 GO:0005515
Glsi08g1095 845 SMART WD40_4 804 842 IPR001680 GO:0005515
Glsi08g1095 845 SMART WD40_4 587 627 IPR001680 GO:0005515
Glsi08g1095 845 SMART WD40_4 760 797 IPR001680 GO:0005515
Glsi08g1095 845 SUPERFAMILY WD40 repeat-like 548 843 IPR036322 GO:0005515
Glsi08g1095 845 SUPERFAMILY Protein kinase-like (PK-like) 200 475 IPR011009 -
Glsi08g1095 845 Gene3D Transferase(Phosphotransferase) domain 1 198 471 - -
Glsi08g1095 845 ProSiteProfiles Trp-Asp (WD) repeats profile. 685 724 IPR001680 GO:0005515
Glsi08g1095 845 SMART ring_2 6 50 IPR001841 -
Glsi08g1095 845 MobiDBLite consensus disorder prediction 515 535 - -
Glsi08g1095 845 Pfam WD domain, G-beta repeat 681 715 IPR001680 GO:0005515
Glsi08g1095 845 Pfam WD domain, G-beta repeat 551 584 IPR001680 GO:0005515
Glsi08g1095 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Glsi08g1095 845 Pfam RING-type zinc-finger 6 48 IPR027370 -
Glsi08g1095 845 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 685 716 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1095 546 787 Acyl Lipid Metabolism Gene Families AT3G18860 29.070 3.95e-13 71.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1095 08 8077150 8082290 Glsi08g1095 08 8077150 8082290 ECH