Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1094 ATGTCTGCGCTCTCAAATTCGTATTTCTCTACTATAAAACCTCTTCAGAGAACAGCTCATTTTAATACCAATGTCACCTTTATTGTACCGTCGTCTTCTGTTTGCTCCTCGTGTCGGCTGCGACGACGTTGTTGCAGGCGCACACCCATTGTTTCGTCTGTGAAGGAGAATATGGGTCGTATTAAAAAGACCATCAATGATTTCACGAGCATGACCTACTGGGTTGTTCGTGATTACTATCGTCTGGTAGATTCCGTCAATGCCTTCGAGCCACAGATACAGAGACTTTCTGATGAGCAGTTGACTACGAAAACCCAGGAGTTTCGCCTCCGGCTTAGGCGAGGGGAGACACTTGCTGATATTCAAGCTGAGGCATTTGCTGTTGTTCGTGAAGCTGCAAGGAGAAAACTTGGAATGCGCCATTTTGATGTCCAGATTATTGGTGGAGCGGTGCTTCATGACGGGTCCATTGCGGAAATGAAAACAGGGGAGGGAAAAACATTAGTTTCCACCTTAGCGGCATATCTTAATGCCTTGACCGGTGAGGGTGTCCATGTGGTTACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGCCGTGTTCATCGTTTCTTAGGTCTTTCTGTTGGTCTTATTCAGAGGGGGATGACTGCTGAAGAGCGGAGGTCCAACTATAGATGTGATATAACATATACCAACAATTCGGAGCTTGGCTTTGATTACTTAAGAGATAATCTTGCTGGAAGTAGTGGACAGCTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCAATTGTTGATGAAGTGGATTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCTGCACGATACCCTGTTGCTGCAAAAGTAGCTGAACTGCTTATAAGAGGAATTCATTACAAAGTAGAGCTTAAAGATAATTCGGTTGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCTAGATTTGTGATGAATGCTTTGAAAGCTAAAGAGTTCTATCGCCAAGATGTGCAATACATAGTCAGAGACGGGAAGGCTTTAATTATCAATGAGTTGACAGGGAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCCGTAGAGGCAAAGGAAGGTTTAAAGATTCAGGCAGATTCAGTTGTGGTAGCACAGATCACATACCAATCATTATTTAAGCTCTATCCTAAGCTGTCCGGAATGACTGGAACTGCAAAAACAGAAGAGAAAGAATTCTTAAAAATGTTCCAGATGCCAGTCATCGAAGTGCCTACAAATCTCCCTAACATTCGTAAAGATTTACCTATTCAAGCTTTTGCGACTGCTCGTGGGAAATGGGAGCAAGTTCGTCGCGAAGTTGACTATATGTTTGGACAAGGTCGTCCTGTCTTAGTTGGGACAACTAGTGTAGAAAATTCTGAACTTTTGTCTGCTCTGCTTAAGGAATGGAAAATTCCCCACAATGTCTTGAATGCTCGGCCTAAGTACGCTGCAAGAGAAGCTGAGATTGTTGCACAGGCAGGGCGTAAAAATGCCATTACAATCTCTACAAATATGGCAGGCAGGGGCACAGATATAATACTTGGTGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGACAGCTTACTTTCGTTTTTGACACGAGAGGCTTCTAATATTGAACTTGCTGGTGAGGCAATTTCACAAAAGGTACTTCCCAAGATAAAGGTTGGATCATCGTCACTGGCTTTACTGGCTAAGACAGCCTTAATGGCTAAATATGTATCCAAAAGCGAGGGTAAAAGCTGGACATATCAGAAGGCTAAATCTTTTATCTCAGAGGCTGTTGAAATGAGTCAGTCGTATGATTTGAATGAGTTGGAGAAACTTGCTAATGAAGAATCTGAGATGTACCCTCTTGGTCCAACAGTCGCAGTTACCTATTTGTCTGTTCTGAAGGATTGTGAAGAGCATGGTTTGCACGAAGGTTCTGAGGTGAAAAGACTTGGAGGCCTTCATGTGATTGGTACATCTTTGCATGAGTCCCGAAGAATTGATAACCAGCTCCGTGGAAGAGCAGGAAGGCAGGGGGATCCTGGATCAACACGATTTATGGTCAGCTTGCAGGATGAGATGTTTCAGAAGTTCAATTTTGACACTGAATGGGCTGTGAGACTTATATCAAAGATTACAAATGATGAAGATATACCAATTGAGGGTGATACCATTGTGAAACAGCTCTTGGCACTGCAAATCAATGCAGAAAAGTATTTCTTTGGCATAAGAAAGAGCCTAGTTGAGTTTGATGAAGTATTAGAGGTGCAACGAAAGCATGTTTATGACCTTAGGCAGTTAATTCTAACGGGAGATGATGAAAGTTGTTCCCAACACATATTCCAGTACATGCAAGCCGTGGTGGATGAGATTGTCTTTGGAAATGTTGATCCACTAAAGCATCCAGGTAGCTGGGATTTGAGTAAGCTCATCAAAGAGTTTGTGACAATTGGTGGAAAGCTGTTGCATGAATCTTTTGCAGGGATTACTGAAGACAATTTTCTGAAATCACTTGGGCAATTGCATGATGTGAGTTCCATTGATATTGTCAACTTTTCCCTTCCAAATTTACCAGCACCTCCAAATACCTTCAGGGGAATCCGCAGGAAGAGCTCTTCATTAAGACGCTGGCTATCTATTTGCTCTGATGATTTGATTAAGAGCGGGAAGTATCGGACGGCAACTAATCTTCTTCGCAAGTACTTTGGAGATTTTCTAATTGCTTCTTATTTAAATATTGTTGAAGAGTCTGGTTACGATGAGAGACATGTAAAGGAAATTGAGAGAGAAGTTCTTGTGAAAACGCTAGATTGTTTCTGGAGAGATCATCTAGTAAACATGAATAGACTCAGTTCAGCGGTAAATGTAAGGAGTTTTGGCCACAGAAATCCGCTTGAAGAGTACAAGATTGATGGTTGTCGGTTTTTCATCTCAATGCTTAGTGCAACTCGAAGGTTAACTGTGGAGTCACTGCTGCAGTACTGGGCATCTCCAATGGAGTCCCAAGAACTATTTGTATCGTAA 3156 0.423 MSALSNSYFSTIKPLQRTAHFNTNVTFIVPSSSVCSSCRLRRRCCRRTPIVSSVKENMGRIKKTINDFTSMTYWVVRDYYRLVDSVNAFEPQIQRLSDEQLTTKTQEFRLRLRRGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMTAEERRSNYRCDITYTNNSELGFDYLRDNLAGSSGQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLIRGIHYKVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRQDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVDYMFGQGRPVLVGTTSVENSELLSALLKEWKIPHNVLNARPKYAAREAEIVAQAGRKNAITISTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTREASNIELAGEAISQKVLPKIKVGSSSLALLAKTALMAKYVSKSEGKSWTYQKAKSFISEAVEMSQSYDLNELEKLANEESEMYPLGPTVAVTYLSVLKDCEEHGLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDIPIEGDTIVKQLLALQINAEKYFFGIRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYMQAVVDEIVFGNVDPLKHPGSWDLSKLIKEFVTIGGKLLHESFAGITEDNFLKSLGQLHDVSSIDIVNFSLPNLPAPPNTFRGIRRKSSSLRRWLSICSDDLIKSGKYRTATNLLRKYFGDFLIASYLNIVEESGYDERHVKEIEREVLVKTLDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLQYWASPMESQELFVS 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1094 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 457 IPR027417 -
Glsi08g1094 1051 Gene3D Helical scaffold and wing domains of SecA 908 1038 - -
Glsi08g1094 1051 FunFam Protein translocase subunit SecA 79 299 - -
Glsi08g1094 1051 PRINTS SecA protein signature 381 403 IPR000185 GO:0005524|GO:0006605|GO:0006886
Glsi08g1094 1051 PRINTS SecA protein signature 121 145 IPR000185 GO:0005524|GO:0006605|GO:0006886
Glsi08g1094 1051 PRINTS SecA protein signature 228 248 IPR000185 GO:0005524|GO:0006605|GO:0006886
Glsi08g1094 1051 PRINTS SecA protein signature 175 185 IPR000185 GO:0005524|GO:0006605|GO:0006886
Glsi08g1094 1051 PRINTS SecA protein signature 418 435 IPR000185 GO:0005524|GO:0006605|GO:0006886
Glsi08g1094 1051 PRINTS SecA protein signature 159 173 IPR000185 GO:0005524|GO:0006605|GO:0006886
Glsi08g1094 1051 PRINTS SecA protein signature 455 468 IPR000185 GO:0005524|GO:0006605|GO:0006886
Glsi08g1094 1051 CDD SF2_C_secA 462 733 IPR044722 -
Glsi08g1094 1051 SMART SecA_PP_bind_2 289 400 IPR011130 GO:0016020|GO:0017038
Glsi08g1094 1051 Pfam SecA Wing and Scaffold domain 763 1038 IPR011116 GO:0016020|GO:0017038
Glsi08g1094 1051 Gene3D - 290 410 - -
Glsi08g1094 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 746 IPR027417 -
Glsi08g1094 1051 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 54 1048 IPR000185 GO:0005524|GO:0006605|GO:0006886
Glsi08g1094 1051 NCBIfam preprotein translocase subunit SecA 86 858 IPR000185 GO:0005524|GO:0006605|GO:0006886
Glsi08g1094 1051 Gene3D - 459 765 IPR027417 -
Glsi08g1094 1051 FunFam Preprotein translocase SecA subunit 290 410 - -
Glsi08g1094 1051 FunFam Protein translocase subunit SecA 909 1038 - -
Glsi08g1094 1051 SUPERFAMILY Pre-protein crosslinking domain of SecA 288 409 IPR036670 GO:0016020|GO:0017038
Glsi08g1094 1051 SUPERFAMILY Helical scaffold and wing domains of SecA 768 1038 IPR036266 -
Glsi08g1094 1051 CDD DEXDc_SecA 100 456 - -
Glsi08g1094 1051 FunFam Protein translocase subunit SecA 768 887 - -
Glsi08g1094 1051 Pfam SecA preprotein cross-linking domain 296 400 IPR011130 GO:0016020|GO:0017038
Glsi08g1094 1051 Gene3D - 80 457 IPR027417 -
Glsi08g1094 1051 Pfam SecA DEAD-like domain 76 443 IPR011115 GO:0005524|GO:0016020|GO:0017038
Glsi08g1094 1051 ProSiteProfiles SecA family profile. 61 765 IPR014018 -
Glsi08g1094 1051 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 310 IPR014001 -
Glsi08g1094 1051 SMART SecA_DEAD_2 61 444 IPR011115 GO:0005524|GO:0016020|GO:0017038
Glsi08g1094 1051 Hamap Protein translocase subunit SecA [secA]. 60 1041 IPR000185 GO:0005524|GO:0006605|GO:0006886
Glsi08g1094 1051 Gene3D Helical scaffold and wing domains of SecA 768 881 - -
Glsi08g1094 1051 ProSitePatterns SecA family signature. 544 559 IPR020937 GO:0006605|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1094 Glsi-ChrGlsi08 8057758 8075914 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1094 08 8057758 8075914 Glsi08g1094 08 8057758 8075914 ECH