Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1079 ATGTGTCCTCTGACCCCCACTGACTTGCGGCGGATTTTTGAGAAGCTGGACATGAATGACGATGGCTTTGTGAGCCTTGGCGAGCTCAACTGGTTGCTGGAGAAGATAGGTTTCCAGTTTAGCCCAGAGGAGCTGGAATCTCTTGTGGGAAAGAAGAGCCTCGACTTCAATGAGTTCTTGTTCTTTTACCAGTCCATATCGAAGCAGAACAATGGCGAGGACAAAGAGAAAGAAGATGAGATTGAGGACGTGGAGAGCGACCTTGCTAAGGCCTTCGAGGTGTTTGATTTGGACGGAGATGGGTTCATCACCAGCCAAGAGCTGGAGTGTGTGCTCAAGAGGCTTGGCTTGTGGGACGAAAAGAGTGGCAAGGATTGCACGAGCATGATTTGTGTATACGACACCAATCTAGATGGCCAGCTTGATTTCCAGGAATTCAAGAACATGATGCTGCTTACTGCTTGA 465 0.4882 MCPLTPTDLRRIFEKLDMNDDGFVSLGELNWLLEKIGFQFSPEELESLVGKKSLDFNEFLFFYQSISKQNNGEDKEKEDEIEDVESDLAKAFEVFDLDGDGFITSQELECVLKRLGLWDEKSGKDCTSMICVYDTNLDGQLDFQEFKNMMLLTA 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1079 154 ProSiteProfiles EF-hand calcium-binding domain profile. 121 154 IPR002048 GO:0005509
Glsi08g1079 154 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Glsi08g1079 154 Pfam EF-hand domain pair 86 150 IPR002048 GO:0005509
Glsi08g1079 154 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 54 150 - -
Glsi08g1079 154 SMART efh_1 8 36 IPR002048 GO:0005509
Glsi08g1079 154 SMART efh_1 125 153 IPR002048 GO:0005509
Glsi08g1079 154 SMART efh_1 87 115 IPR002048 GO:0005509
Glsi08g1079 154 SUPERFAMILY EF-hand 8 151 IPR011992 -
Glsi08g1079 154 Gene3D - 74 153 - -
Glsi08g1079 154 Gene3D - 6 69 - -
Glsi08g1079 154 FunFam Probable calcium-binding protein CML44 65 153 - -
Glsi08g1079 154 FunFam Probable calcium-binding protein CML44 5 64 - -
Glsi08g1079 154 CDD EFh 87 150 IPR002048 GO:0005509
Glsi08g1079 154 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Glsi08g1079 154 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Glsi08g1079 154 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Glsi08g1079 154 Pfam EF hand 10 29 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1079 Glsi-ChrGlsi08 7936026 7936490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1079 4 151 EF-hand Containing Proteins AT1G21550 49.664 6.95e-44 140
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1079 08 7936026 7936490 Glsi08g1079 08 7936026 7936490 ECH