Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1023 ATGCGTCACCGAGGAATGGACCCCGACGAGGAGGAGGACGAGGAGGAATACGAAGTCGATGACGACGAAGCGGAGGAGGAGGAGGACAGAGGTGCCTCCACCAGGAAGCGGAGAAGATCTGGGTTCATAGACGACGATGCCGAGGAGGTTGACGAGGATGAAGAGGAAGAGGAGGACGATGAAGATGATTTTGACGGGAGAGGCGGTCGAAAGCGCCAATACAAGAGGATGGCCGCTTCCAATTTCTTCGATGAAGAGGCGCAGGTGGACAGCGATGAGGAAGAGGAAGAGGAAGAAGCCGAGGACGACTTCATAGTTGAGGAAGGAGCTGATCTACCAGATGAAGATGGTGGTCGGAGGATGCATAGCCGCCGTATACTGCCACATGACCAAGAAGACCATGAAGATCTTGAAGCTATTGGGAGAAGCATTCAGGAAAGATATGGAAGGCGTGTCACAGATTATGATGAAGAAGCTACAGATGTAGAGCAGCAAGCACTTCTGCCATCTGTGAGAGATCCAAAATTGTGGATGGTGAAATGTGCGATTGGTCGTGAACGAGAGGCAGCTGTTTGCCTCATGCAAAAGTACATTGATAAAGGCTCTGAATTGCAAATAAGGTCAGCTATTGCTCTTGATCATCTCAAAAACTATATATATGTGGAAGCAGATAAAGAAGCCCATGTGAGAGAGGCTTGCAAAGGACTACGCAACTTATATGCCCAGAAAATAACGCTAGTTCCTATTAGAGAAATGACTGACGTTCTGTCAGTTGAAAGCAAAGCCATTGATCTTTCTAGAGATACTTGGGTCAGAATGAAGATTGGCACATACAAAGGGGACCTTGCCAAAGTTGTGGATGTGGATAATGTGCGGCAGAGGGTTACTGTGAAATTAATTCCGAGGATAGACTTACAGGCCCTTGCAAACAAATTGGAAGGTAGAGAAGTTGTAAAAAAGAAGGCATTTGTTCCTCCTCCTCGGTTTATGAATGTTGATGAAGCTAGGGAATTGCATATCCGTGTAGAGCATAGGCGTGATCCCATGACTGGGGAACGCTTTGAAACCATTGGAGGCATGATGTTCAAAGATGGTTTCTTGTATAAAACAGTATCAATAAAATCCATTAGTGCTCAGAACATCAAACCAACTTTTGATGAACTTGAAAAATTTCGGAAACCGGGTGAGAATGGAGATGGTGATGTAGCCAGTCTGTCAACTTTATTTGCAAACAGAAAGAAAGGGCATTTTATGAAAGGTGATGCTGTTATTGTCATCAAGGGAGATCTAAAGAACTTGAAGGGGTGGGTAGAGAAAGTTGATGAAGATAATGTTCATATAAGACCAGAAATCAAGGGTCTTCCAAAAACTCTTGCTGTGAATGAAAGGGAACTCTGTAAATACTTTGAACCTGGAAACCATGTTAAAGTTGTTTCTGGCACACAAGAAGGTGCTACTGGTATGGTTGTGAAGGTGGAGCAGCATGTCCTGATCATATTATCTGATACAACAAAAGAACATCTCCGTGTATTTGCTGACGATGTTGTGGAGAGCTCTGAAGTAACCACAGGAGTTACAAGAATTGGGGACTATGAACTTCATGATCTTGTGTTGCTAGACAATTTGAGCTTTGGTGTAATAATACGTGTAGAAAGTGAGGCGTTTCAGGTTCTTAAGGGGGTTCCTGACAGACCTGAAGTTGCGCTTATTAAACTAAGAGAGATCAAATGTAAGATTGAGAAGAAAATAAGTGTGCAGGATAGGTTTAAGAATACAGTATCAGCAAAGGATGTTGTGCGGATAGTTGAGGGTCCCTGCAAGGGCAAACAAGGACCTGTGGAGCACATATATAGAGGAGTCTTGTTCGTCTATGATCGACATCACCTTGAACATGCAGGCTTTATATGTTCTAAAGCCCAGTCATGTGTGGTTGTGGGAGGTTCACGGTCCAATGGTGACAGAAATGGTGATGCCTACTCAAGATTTCCCAATCTCAGAACCCCTCCTCGCATTCCACAGTCTCCAAGGAGGTTTCCTCGAGGAGGTCCACCAAATGATTTTGGAGGAAGGCATAGGGGTGGAAGAGGGCAAGATGGATTGGCTGGTGCAACAGTTAAAATACGCCAAGGTCCCTATAAAGGTTACCGTGGGCGTGTTATAGAACTTAAGGGCCCATCAGTTCGAGTTGAACTGGAGTCTCAAATGAAGGTTGTGACAGTTGATCGCAACCATATATCTGATAATGTGACCGTAACCCCATATCGTGAAACGTCTCGATATGGAATGGGAAGTGAGACCCCACTTCCTTCTCGAACTCCATTACATGCATATATGACTCCTATGAGAGATCCTGGAGCAACACCTATTCATGATGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCATATACGCCAATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGGACCAGTCCACAGTACCAGCCAGGGAGTCCTGCTTCAAGGCCGTATGAAGCTCCAACTCCTGGTGCTGGTTGGGCTAGCACTCCTGGTGGTAATTATAGCGAAGCTGGGACACCACGGGACAGTTCTGCTTATGCCAATGCTCCAAGCCCATATTTACCATCGACACCTGGTGGACAGCCTATGACTCCAAATCCAGCATCTTATCTTCCTGGCACCCCTGGAGGGCAGCCTATGACTCCAGGAACTGGTGGTCTGGACATGATGTCCCCAGTTATAGGTGGGGACAGTGAAGGACCGTGGTTTATGCCAGACATATTGGTAAATGTACGCAGGGCTGGAGAGGAATCTGTTGTGGGGGTTATAAGAGAGGTGCTTCCGGATGGGTCTTGCAGGTTAGTCCTGGGGTCGAGTGGGAGTGGTGAAACAGTAACAGCCCTTCCTAATGAAATGGAGGCGGTAGTACCAAGGAAATCAGACAAAATAAAGATAATGGGTGGTGCACTGCGTGGTGCTACAGGCAAATTGATTGGTGTTGATGGCACTGATGGGATTGTAAAGGTAGATGACACCCTGGATGTGAAGATTTTAGACCTAGTCATTTTGGCAAAATTAGCTCAACCATGA 3096 0.4603 MRHRGMDPDEEEDEEEYEVDDDEAEEEEDRGASTRKRRRSGFIDDDAEEVDEDEEEEEDDEDDFDGRGGRKRQYKRMAASNFFDEEAQVDSDEEEEEEEAEDDFIVEEGADLPDEDGGRRMHSRRILPHDQEDHEDLEAIGRSIQERYGRRVTDYDEEATDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNLYAQKITLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDPMTGERFETIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGENGDGDVASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHLRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVALIKLREIKCKIEKKISVQDRFKNTVSAKDVVRIVEGPCKGKQGPVEHIYRGVLFVYDRHHLEHAGFICSKAQSCVVVGGSRSNGDRNGDAYSRFPNLRTPPRIPQSPRRFPRGGPPNDFGGRHRGGRGQDGLAGATVKIRQGPYKGYRGRVIELKGPSVRVELESQMKVVTVDRNHISDNVTVTPYRETSRYGMGSETPLPSRTPLHAYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPASRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGGQPMTPNPASYLPGTPGGQPMTPGTGGLDMMSPVIGGDSEGPWFMPDILVNVRRAGEESVVGVIREVLPDGSCRLVLGSSGSGETVTALPNEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1023 1031 CDD KOW_Spt5_3 468 518 IPR041976 -
Glsi08g1023 1031 MobiDBLite consensus disorder prediction 9 28 - -
Glsi08g1023 1031 MobiDBLite consensus disorder prediction 29 45 - -
Glsi08g1023 1031 CDD KOW_Spt5_2 417 467 IPR041975 -
Glsi08g1023 1031 Gene3D - 471 520 IPR014722 -
Glsi08g1023 1031 SUPERFAMILY Translation proteins SH3-like domain 409 447 IPR008991 -
Glsi08g1023 1031 Gene3D - 264 306 IPR014722 -
Glsi08g1023 1031 Pfam Spt5 transcription elongation factor, acidic N-terminal 82 169 IPR022581 -
Glsi08g1023 1031 MobiDBLite consensus disorder prediction 784 910 - -
Glsi08g1023 1031 SMART nusgn_4 173 259 IPR006645 GO:0140673
Glsi08g1023 1031 CDD KOW_Spt5_5 698 746 IPR041978 -
Glsi08g1023 1031 FunFam Transcription elongation factor SPT5 471 520 - -
Glsi08g1023 1031 SUPERFAMILY Translation proteins SH3-like domain 460 519 IPR008991 -
Glsi08g1023 1031 Coils Coil 10 30 - -
Glsi08g1023 1031 CDD KOW_Spt5_6 972 1029 IPR041980 -
Glsi08g1023 1031 Gene3D - 155 257 IPR036735 GO:0006355
Glsi08g1023 1031 FunFam Transcription elongation factor SPT5 264 306 - -
Glsi08g1023 1031 MobiDBLite consensus disorder prediction 854 873 - -
Glsi08g1023 1031 FunFam Transcription elongation factor SPT5 155 257 - -
Glsi08g1023 1031 Pfam KOW motif 471 512 IPR005824 -
Glsi08g1023 1031 SMART kow_9 416 443 IPR005824 -
Glsi08g1023 1031 SMART kow_9 978 1005 IPR005824 -
Glsi08g1023 1031 SMART kow_9 264 291 IPR005824 -
Glsi08g1023 1031 SMART kow_9 468 495 IPR005824 -
Glsi08g1023 1031 SMART kow_9 698 725 IPR005824 -
Glsi08g1023 1031 SMART kow_9 592 619 IPR005824 -
Glsi08g1023 1031 MobiDBLite consensus disorder prediction 112 135 - -
Glsi08g1023 1031 MobiDBLite consensus disorder prediction 650 702 - -
Glsi08g1023 1031 Pfam Early transcription elongation factor of RNA pol II, NGN section 175 256 IPR005100 -
Glsi08g1023 1031 MobiDBLite consensus disorder prediction 46 63 - -
Glsi08g1023 1031 CDD KOW_Spt5_4 596 638 IPR041977 -
Glsi08g1023 1031 MobiDBLite consensus disorder prediction 1 135 - -
Glsi08g1023 1031 CDD KOW_Spt5_1 268 305 IPR041973 -
Glsi08g1023 1031 PIRSF Spt5 2 1031 IPR017071 GO:0006357|GO:0032784
Glsi08g1023 1031 ProSitePatterns Ribosomal protein L24 signature. 420 437 IPR005825 GO:0003735|GO:0005840|GO:0006412
Glsi08g1023 1031 PANTHER SUPPRESSOR OF TY 5 66 1008 IPR039659 GO:0006357|GO:0032784
Glsi08g1023 1031 MobiDBLite consensus disorder prediction 819 833 - -
Glsi08g1023 1031 FunFam Transcription elongation factor SPT5 685 748 - -
Glsi08g1023 1031 Gene3D - 684 748 IPR014722 -
Glsi08g1023 1031 CDD NGN_Euk 175 257 IPR039385 -
Glsi08g1023 1031 Gene3D - 411 468 IPR014722 -
Glsi08g1023 1031 MobiDBLite consensus disorder prediction 86 111 - -
Glsi08g1023 1031 FunFam Transcription elongation factor SPT5 411 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1023 Glsi-ChrGlsi08 7537337 7544046 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1023 08 7537337 7544046 Glsi08g1023 08 7537337 7544046 ECH