Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1003 ATGACCCGGAAATTAACGCCGTCCCTTTTTGGCGGCCAGTTTCGGGGCGAGAGAGGAAAAAAAAAGGGATTGGATATCGTACAGAAAACGCCAGAGAAAGGGAGTGGATCGATACCGAAGCCGCACCAGACATTTTATAAGCGTCATTTGCCTTGTCGAATCGAATCGCTCAGTTTTGCATTTCAATTCTCTTTCTTTTTCTTCTTCTTCTTCTTCTTCAACAATTACTCACAAAGGCCAAAAGGAGGACCTCTCAGTTTTCTGTTAGGTTTCACCATGGCATCCAAGCGGATCTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCTACATCTTGCAGCGCCGGTCCTGTTGCTGAAGACATGTTTCATTGGCAGGCAACAATTATGGGTCCTCCTGACAGTCCTTATGCTGGAGGTGTCTTCCTCGTAACTATTCATTTTCCTCCAGATTATCCCTTTAAGCCACCGAAGGTTGCATTCAGGACGAAGGTATTCCACCCAAATATAAATAGCAATGGAAGCATTTGCCTTGACATATTGAAGGAGCAGTGGAGCCCTGCTCTAACTATTTCCAAGGTGTTGCTCTCTATTTGCTCCCTGTTGACGGACCCAAATCCTGATGATCCTTTGGTCCCTGAAATTGCCCACATGTACAAGACAGACAGGAGCAAATATGAGTCAACTGCAAGAAGTTGGACCCAGAAATATGCCATGGGCTAA 723 0.455 MTRKLTPSLFGGQFRGERGKKKGLDIVQKTPEKGSGSIPKPHQTFYKRHLPCRIESLSFAFQFSFFFFFFFFFNNYSQRPKGGPLSFLLGFTMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1003 240 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 93 239 IPR000608 -
Glsi08g1003 240 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 121 227 - -
Glsi08g1003 240 SMART ubc_7 96 239 - -
Glsi08g1003 240 SUPERFAMILY UBC-like 91 239 IPR016135 -
Glsi08g1003 240 Gene3D Ubiquitin Conjugating Enzyme 90 240 IPR016135 -
Glsi08g1003 240 CDD UBCc 95 234 IPR000608 -
Glsi08g1003 240 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 166 181 IPR023313 -
Glsi08g1003 240 FunFam Ubiquitin-conjugating enzyme 28, E2 93 240 - -
Glsi08g1003 240 Pfam Ubiquitin-conjugating enzyme 97 233 IPR000608 -
Glsi08g1003 240 MobiDBLite consensus disorder prediction 14 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1003 Glsi-ChrGlsi08 7435332 7438228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1003 94 206 Miscellaneous Gene Families AT3G17000 36.975 9.43e-19 81.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1003 08 7435332 7438228 Glsi08g1003 08 7435332 7438228 ECH