Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0948 ATGGAGAGGTCTAGATCTAAGAGGAACTACTACTATGACCAAGACTATGACTCGGAGACCTTGGCTAGGACCAGACCTCGTTATAATCACCACTATACTAGTACTCACCGTCATCGTGGCGGCGGTGGTCGACCCTCTAAGGCGCAAGACTCGTCTTTATCGGTGAACACTAGTTACCGCATTCTTTGCCACGATATGAAGGCTGGTGGAGTGATTGGCAAGTCAGGTAGCATCATAAAGTCTATTAGGCAACACACCGGCGCGTGGGTTAACGTGCACGAGCTGATCCCTGGCGACGAGGAGCGAATCATTGAGATTTCCGACACCCGCCGGCGAGACCCAGATGGCCGAATGCCGTCGTTCTCGCCGGCTCAGGAGGCCCTGTTGATGATTCATGAGAGGATTCTTGATAGCGACGCTGCGTTTGGGATTGGCGAGGAGGAGGAGGAGTATGGGGGCAGAGGAGGTGGGAGCAATCGTGTGGCAACTAGATTGGTCGTGTCCAGAATGCATGTAGGGTGTCTGTTGGGAAAAGGAGGGAAGATTATTGAACAAATGAGGATGGAAACCAAGACCCAAATTAGGATACTTCCTAGAGATCACAATCTACCTCGTTGTGTTTCCATGTCGGAAGAAATTGTTCAGGTTGTAGGCGATGTAAATGCTGTAAAGAACGCTATAGCACTTATCTCATCACGCTTGAGGGAAAGCCAGCATCGGGACCGCAGTCATTTCCATGGTCGGGTACATTCATCAGAGCAATTTTTCCTTCCTGATGATGATTATATACCTCACATATCTGGTGCAGCTCGTAAATCATCTACGGATGGGGCAACTTTTGGATCACGACTATCTGCCACCAGTATAAGAAGCAATAGCTACCCCTCATCAGGTTATGCAATGGAACCAGAGGCTTCTCTTGTGGCTGATGATGCACAGCCCCTTTATGGTGAGGACCTTGTTTTCCAGATACTTTGTCCAGTGGACAAAGTTGATCGCATTATTGGGGAATCAGATGGAATTGTAGAGTTCCTTCAAAATGAAGTTGGCGTAGATGTTAAGGTCACCGATCCTGTGGTTGGTTCAGATGAACAGATAATCATCATTTCTTCAGTGGACGATCCTGATGATGAGCTGTTTCCAGCTCAGGAAGCTTTGTTGCATATTCAAACTCGCATTGTTGATTTTGAGCTAGATAAGGACAACATTATAACCACCAGACTTGTCGTCCCATCTAGTGATGTTGAATGCTTAGATGGAAAAGATGCATCTCTATTGGAGATAAGGAGGCTAACTGGTGCAAATGTTCAAATTCTGCCTAAAGAAGAACTACCTCTGTGTGTTGCAAAAAATGATGAGCTGGTACAGATTGTGGGTGAGATCAAAGCAGCCCGAGATGCTGTTGTTGAGGTGACATCAAGACTACGCAGTTATTTGTATAGGGATTTCTTTCAAAGGGATACAGTGCTGCCATCTGCCCCTGTACCTAATGTGGAGGCATCTTCTAATAATGTAGCTTCATTTCATGAGGGTTATATTGGTACTGAAACTCCTACAACATATCAGAATGTGCAAACTCTGGCAGCTGCACTTCCGTCAAAGGAAATTGGAGGGTCTAGCACTGAGACAGTAAAGCAGAAAGAAAGTGACCGCCGTGATGATGTGATGAGTAGTTTGAATAGGATCCCTGTGCCACTTGTCACAAGGAGTACACTTGAAGTTGTCATACCAGAGCATGCAGTTCCAAAGCTTACTGCAAAATCCAAAAACAAGCTTGCACTGATAAGTGAGTTATCTGGAGCCAATGTAACCCTTGTAGAAGATAGACCAGAGGTGACACAGAAGATAATTCAGATATCTGGTACTCCAGAGCAGGCAGAGAAAGCCCAGAGCTTGCTCCTGGGATTTATTTTGAGCACGCAAGAAGATGGCCCTTAA 1938 0.4613 MERSRSKRNYYYDQDYDSETLARTRPRYNHHYTSTHRHRGGGGRPSKAQDSSLSVNTSYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWVNVHELIPGDEERIIEISDTRRRDPDGRMPSFSPAQEALLMIHERILDSDAAFGIGEEEEEYGGRGGGSNRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNAIALISSRLRESQHRDRSHFHGRVHSSEQFFLPDDDYIPHISGAARKSSTDGATFGSRLSATSIRSNSYPSSGYAMEPEASLVADDAQPLYGEDLVFQILCPVDKVDRIIGESDGIVEFLQNEVGVDVKVTDPVVGSDEQIIIISSVDDPDDELFPAQEALLHIQTRIVDFELDKDNIITTRLVVPSSDVECLDGKDASLLEIRRLTGANVQILPKEELPLCVAKNDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDTVLPSAPVPNVEASSNNVASFHEGYIGTETPTTYQNVQTLAAALPSKEIGGSSTETVKQKESDRRDDVMSSLNRIPVPLVTRSTLEVVIPEHAVPKLTAKSKNKLALISELSGANVTLVEDRPEVTQKIIQISGTPEQAEKAQSLLLGFILSTQEDGP 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0948 645 Gene3D K Homology domain, type 1 158 239 IPR036612 GO:0003723
Glsi08g0948 645 ProSiteProfiles Type-1 KH domain profile. 160 230 - -
Glsi08g0948 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 313 375 IPR036612 GO:0003723
Glsi08g0948 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 396 484 IPR036612 GO:0003723
Glsi08g0948 645 Pfam KH domain 163 231 IPR004088 GO:0003723
Glsi08g0948 645 Pfam KH domain 59 107 IPR004088 GO:0003723
Glsi08g0948 645 Pfam KH domain 571 633 IPR004088 GO:0003723
Glsi08g0948 645 ProSiteProfiles Type-1 KH domain profile. 56 128 - -
Glsi08g0948 645 ProSiteProfiles Type-1 KH domain profile. 569 633 - -
Glsi08g0948 645 SMART kh_6 159 235 IPR004087 GO:0003676
Glsi08g0948 645 SMART kh_6 318 391 IPR004087 GO:0003676
Glsi08g0948 645 SMART kh_6 55 136 IPR004087 GO:0003676
Glsi08g0948 645 SMART kh_6 568 638 IPR004087 GO:0003676
Glsi08g0948 645 SMART kh_6 402 476 IPR004087 GO:0003676
Glsi08g0948 645 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 49 296 - -
Glsi08g0948 645 Gene3D K Homology domain, type 1 55 137 IPR036612 GO:0003723
Glsi08g0948 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 54 107 IPR036612 GO:0003723
Glsi08g0948 645 CDD KH-I_PEPPER_rpt1_like 57 129 - -
Glsi08g0948 645 CDD KH-I_PEPPER_rpt2_like 163 235 - -
Glsi08g0948 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 570 641 IPR036612 GO:0003723
Glsi08g0948 645 Gene3D - 318 479 - -
Glsi08g0948 645 CDD KH-I_PEPPER_rpt2_like 405 476 - -
Glsi08g0948 645 MobiDBLite consensus disorder prediction 535 555 - -
Glsi08g0948 645 CDD KH-I_PEPPER_rpt1_like 319 387 - -
Glsi08g0948 645 Gene3D K Homology domain, type 1 568 639 IPR036612 GO:0003723
Glsi08g0948 645 ProSiteProfiles Type-1 KH domain profile. 319 386 - -
Glsi08g0948 645 MobiDBLite consensus disorder prediction 22 52 - -
Glsi08g0948 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 153 241 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0948 Glsi-ChrGlsi08 6985207 6990105 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0948 08 6985207 6990105 Glsi08g0948 08 6985207 6990105 ECH