Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0901 ATGGCCACGTCCGACACTGTCTTTTGGATATTCATCCAAACAATCACACGTTCTCACTGCAGATTCAATGCTCTCATTCTCATCCGTCAGTTTCCCTCATTTTCTCCCCTTATCCCACCATCCAAACAACTCGTAATTCTCTCAATGGCGACTCCACTGTCTTCCCCCTTTCGCGCCTCTTATCTTCCGCCGTCACCATCATCATCATCATCTACTGTCTGTCTTCCCAGTTCAGCCCACTTCTCTATGCCATCCACAAAGTTGAGAACTTTCTTCATCCCATCTGAAATGTTCAAATACGCTGCTAATGCACCCAAAAGAAACCGTGGCAGGTCGCTCGTTGTTCGTATGTCCTGGGACGGACCCCTCTCTTCCGTCAAATTGATCACTCAGGGAAAAAATGTAGAGTTGACGGATAAGGTTAAGCAGCATGTAGAAGAGAAGGTAGGGAAAGCAGTTCAGAACCACAGTCACTTAGTTAGGGAGGTCGACGTGAGGTTATCGATCCGAGGAGGAGGAGAGTTTGGGAAGGGACCCAGGACCAGAAGATGTGAGGTAACTTTGTTTACCAAGAGGCATGGAGTGGTGCGGGCTGAGGAAGACGCAGAAACTCTTTATGGGAGCATAGATTTGGTATCATCAATTATTCAGAGAAAGCTGAGGAAGATAAAGGAAAAGGAGTCAGATCATGGTCGCCACATGAAGGGCTTCAATAGGTTGAAGGTCAGGGAACCTGTAACTGAGGTACCCTACGATGAGACAGAGGTCACGCCTCCCCAGCAAGAGGAAGAAATATCAATAGATGAGGTTGTCCGTACAAAATACTTTGACATGCCACCATTAACTATATCTGAAGCAATTGAGCAGCTCGAAAATGTTGATCATGACTTCTATGGTTTTCGAAATGAAGAAACTGGGGAGATTAATATTGTATACAGAAGAAAAGAAGGAGGTTATGGACTCATTATACCTAAAGGAGATGGTAAAGCTGAGAAATTGGAGCCTGTGGTGGTTGAACCAGCAAGAGAACCCTCCCTGACAGAATGA 1047 0.4565 MATSDTVFWIFIQTITRSHCRFNALILIRQFPSFSPLIPPSKQLVILSMATPLSSPFRASYLPPSPSSSSSTVCLPSSAHFSMPSTKLRTFFIPSEMFKYAANAPKRNRGRSLVVRMSWDGPLSSVKLITQGKNVELTDKVKQHVEEKVGKAVQNHSHLVREVDVRLSIRGGGEFGKGPRTRRCEVTLFTKRHGVVRAEEDAETLYGSIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTEVPYDETEVTPPQQEEEISIDEVVRTKYFDMPPLTISEAIEQLENVDHDFYGFRNEETGEINIVYRRKEGGYGLIIPKGDGKAEKLEPVVVEPAREPSLTE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0901 348 FunFam ribosome-binding factor PSRP1, chloroplastic 280 331 - -
Glsi08g0901 348 CDD RaiA 127 226 IPR003489 GO:0044238
Glsi08g0901 348 Hamap Ribosome hibernation promoting factor [hpf]. 126 325 IPR034694 -
Glsi08g0901 348 PANTHER 30S RIBOSOMAL PROTEIN 112 334 - -
Glsi08g0901 348 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 128 233 IPR036567 -
Glsi08g0901 348 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 268 321 IPR032528 -
Glsi08g0901 348 Gene3D - 127 231 IPR036567 -
Glsi08g0901 348 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 129 226 IPR003489 GO:0044238
Glsi08g0901 348 NCBIfam ribosome-associated translation inhibitor RaiA 128 231 IPR003489 GO:0044238
Glsi08g0901 348 Gene3D - 280 330 IPR038416 -
Glsi08g0901 348 FunFam Ribosome-binding factor PSRP1, chloroplastic 128 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0901 Glsi-ChrGlsi08 6686972 6688779 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0901 08 6686972 6688779 Glsi08g0901 08 6686972 6688779 ECH