Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0261 ATGTTGTCTGTGCACCTTCTCTGCTTCCATAGGCACCCACCCCTATCACTGTCTCAAAAGCTAGAATTCAAGGAAAGAAGATTCATCCCAAACCCAAACCCAAACCCAAACGCATCTTCTTCATCTTGTGGTTTCAGAGTTCATGCCGTGAAGGAAGACTCGCAGCAATATGAGTATGAGGTAGACCCAGATAAGGCCAGAGAAGCCCTCCAGAAGCTTGACCAGCAGCTTCAGTCTCTCTCCACCAAACAAGTCTCTTCTCCTAAACTCAGGGCTTCGGAGGTGAAATTCGCAAAAGAAGATGCAAGAGTGAATATGAGAGAAAAGGAGGTAGAAATATCAGGGTCGTTTCTGGCATATACAGCTTCAGCTCTGGTTCTCTTCACCATATTTTACAATTTTCTCTTTTACACTGTAATTGCACCATCCATCGATGCCAAAAAGTGTTCCAGGTTCGTTGGTTCGAGGATGGAGGAAAAGATCCCATTTAAGAATCTCCATAGTAGGGAGTATTCGGGCCACAAGAAGAAGGTGCACTCCGTGGCCTGGAATTGCACTGGCACAAAACTTGCTTCCGGCTCTGTGGATCAAACTGCTCGAATTTGGCATATTGAGCCACACGGGCATGGTAAGGTCAAAGATATTGAATTGAAGGGTCACACTGATAGTGTGGATCAGCTATGTTGGGACCCCAAGCATGCTGATCTGATTGCAACTGCATCGGGTGATAAGACTGTTCGTCTGTGGGATGCTCGTAGTGGAAAATGCTCACAACAGGCGGAACTTAGTGGGGAGAATATCAACATCACCTACAAACCTGATGGAACTCATGTTGCTGTAGGTAATAGGGATGACGAGTTGACTATACTGGATGTTCGGAAGTTTAAACCAATTCATAGGCGCAAGTTCAGTTACGAGGTAAATGAGATTGCTTGGAACATGACAGGAGAGATGTTCTTTCTAACAACAGGAAACGGGACTGTGGAAGTACTGGCTTACCCATCTCTTCGGCCTCTTGATACCCTCACGGCTCATACAGCTGGGTGTTATTGCATTGCAATTGATCCGACAGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCCTTGTCAGCCTGTGGGATATCTCAGAGATGCTCTGCGTGCGTACCTTCACAAAGCTGGAATGGCCTGTCAGGACAATTGGTTTCAATTATACCGGTGATTATATTGCTTCTGCAAGTGAAGACTTGTTCATTGATATTTCCAATGTTCAAACTGGACGAATGGTGCATCAGATTCCATGCAGGGCTGCCATGAACAGTGTGGAATGGAATCCTAAATACAATTTACTTGCATATGCTGGTGATGACAAAAACAAGTATCAGTCGGATGAAGGTGTTTTTCGAATTTTTGGCTTTGAAAGTGCCTAG 1410 0.4496 MLSVHLLCFHRHPPLSLSQKLEFKERRFIPNPNPNPNASSSSCGFRVHAVKEDSQQYEYEVDPDKAREALQKLDQQLQSLSTKQVSSPKLRASEVKFAKEDARVNMREKEVEISGSFLAYTASALVLFTIFYNFLFYTVIAPSIDAKKCSRFVGSRMEEKIPFKNLHSREYSGHKKKVHSVAWNCTGTKLASGSVDQTARIWHIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLDTLTAHTAGCYCIAIDPTGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIGFNYTGDYIASASEDLFIDISNVQTGRMVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQSDEGVFRIFGFESA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0261 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 205 IPR001680 GO:0005515
Glsi08g0261 469 Gene3D - 333 459 IPR015943 GO:0005515
Glsi08g0261 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 255 - -
Glsi08g0261 469 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Glsi08g0261 469 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Glsi08g0261 469 PRINTS G protein beta WD-40 repeat signature 361 375 IPR020472 -
Glsi08g0261 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 383 IPR001680 GO:0005515
Glsi08g0261 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 259 IPR001680 GO:0005515
Glsi08g0261 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 376 - -
Glsi08g0261 469 PANTHER THO COMPLEX SUBUNIT 3 THO3 158 466 IPR040132 GO:0006406
Glsi08g0261 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 205 - -
Glsi08g0261 469 SMART WD40_4 210 250 IPR001680 GO:0005515
Glsi08g0261 469 SMART WD40_4 164 203 IPR001680 GO:0005515
Glsi08g0261 469 SMART WD40_4 335 374 IPR001680 GO:0005515
Glsi08g0261 469 SMART WD40_4 419 457 IPR001680 GO:0005515
Glsi08g0261 469 SMART WD40_4 294 332 IPR001680 GO:0005515
Glsi08g0261 469 SMART WD40_4 377 416 IPR001680 GO:0005515
Glsi08g0261 469 SUPERFAMILY WD40 repeat-like 165 451 IPR036322 GO:0005515
Glsi08g0261 469 ProSitePatterns Trp-Asp (WD) repeats signature. 237 251 IPR019775 -
Glsi08g0261 469 Gene3D - 143 332 IPR015943 GO:0005515
Glsi08g0261 469 FunFam THO complex subunit 3 157 321 - -
Glsi08g0261 469 CDD WD40 169 412 - -
Glsi08g0261 469 Pfam WD domain, G-beta repeat 168 202 IPR001680 GO:0005515
Glsi08g0261 469 Pfam WD domain, G-beta repeat 337 374 IPR001680 GO:0005515
Glsi08g0261 469 Pfam WD domain, G-beta repeat 216 250 IPR001680 GO:0005515
Glsi08g0261 469 FunFam THO complex subunit 3 331 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0261 Glsi-ChrGlsi08 2464609 2473255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0261 304 465 Miscellaneous Gene Families AT5G08390 23.926 9.18e-14 72.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0261 08 2464609 2473255 Glsi08g0261 08 2464609 2473255 ECH