Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0208 ATGGTTACCGTTTGCCAGCTCACTTATTCCGTTATTTATAACCCTCCTCCATATCTGCCTCTTCCACGTCCCCGCTGTGCTGACTCTGCTGGATTTAACGGATTGATGTCGGAAAAGGGTCGGCCACTACCAAAATTTGGTGAATGGGATGTCAATGATCCAGCCTCAGCTGAGGGGTTCACAGTGATCTTTAACAAGGCTAGGGATGAGAAAAAGACAGGTGGAAAACCTGAGTCACCTGGGAAGGCTGATCCTAATGACAGGCCTGCATTAGATCCTGGCAAAGCTCAGAGTAAAAAATGGTTTTGCTGCGTACAACCTTCTGCAGAGTCATAG 336 0.4762 MVTVCQLTYSVIYNPPPYLPLPRPRCADSAGFNGLMSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPGKADPNDRPALDPGKAQSKKWFCCVQPSAES 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0208 111 MobiDBLite consensus disorder prediction 66 89 - -
Glsi08g0208 111 MobiDBLite consensus disorder prediction 66 111 - -
Glsi08g0208 111 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 38 73 IPR008700 -
Glsi08g0208 111 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 36 103 IPR040387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0208 Glsi-ChrGlsi08 1804184 1808149 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0208 08 1804184 1808149 Glsi08g0208 08 1804184 1808149 ECH