Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0197 ATGGATGAAGGTGAGGGAGGGTTCGGTGAGAGTGGGGATCCGATGGATCAGTTCCATCGCAACGAAGCAATATCAGCTGTTGCTGATGATGGTTTCTTGGCCGAGGAAGAGGACGATTATGAGGACCTTTACAACGACGTTAATGTCGGGGAAGGGTTTCTTCAATCTTTGAGAAAGAACGACGACTTAGGGTTTAGAAATGAGGCGGTTGAGGAGAAAAAGACCCTGCCAGCCGTGGTGCCACCGGAAGCTGGAGGTGTTTCAATCCCAGGTGTCGGTGTCGGTGGTGGTAATGGTACTAGTGACGAGGCTGCTGCTCCTGGTGCTGCTGCTGGTGGAGGTGGAGGTGGAGGTGGAGGTGTGGTTATGGATGGGTCATCCAGAGTTTCTGGGAGAGCAGATGGGATTCAGAACCAGGGGTTTAGAGGGAATGAGATGGGTGTCAAACTCAGCGGTGGATCAGGCAACTCTATCGGTGTTGGAGGTGGGATTAGGGTTGAATTGGGACAACCATCGGGTAAATTGAATGAGATAGAGGAGCAGAGTGCTAATAATAGTGTAGGAATACAAGGGATGGGGCAGCAACCGCATGGTGGAGTTGTTGGGGGTGTGGGAACCGAGAGTTTGGTGAGACAAGGTGGAGGAGGGGGAAATCTCAATAGGATTGGTGGCAATGGAGTTGGGAATAGTGTGAGTGGTGTCAATACTGTCAATACTGGAGGAGCAGCAGCTGTTGTGGGTGGTGGTAGTGGTGGCGGCGGCGGTGGCGGTACTATATTATTTGTGGGTGATTTGCACTGGTGGACCACTGATGCTGAATTGGAGGCAGAACTTTGTAAGTATGGTCCAGTGAAGGAGGTAAAGTTTTTTGATGAGAAGGCAAGTGGGAAGTCAAAAGGGTATTGCCAGGTTGAGTTTTATGAGCCTTCAGCTGCATCTGCTTGTAAGGAAGGGATGAATGGCCATATGTTTAATGGACGGCCATGTGTTGTTGCTTTTGCTTCACCTTTTACTGTTAAGAGAATGGGAGAGGCTCAAGTGAGTAGGAATCAACAGATGACCCAATCTTCAGTATCTCAGGCAAGGAGGGGCCCTGCTGAAGCAGGGCCTAAGACGGGTGGGAATAACATTACTACAGGTGGAAACTACCAAGGTGGGGATAGCAACCGAGGTTATGGGAGAGGCAACTGGGGGAGAGGGAATAATCCTGGGATGGGAAATAGGGCGCCTATGAATCCAATGAGGAATAGAGCTGGTGGGATGGGTGGTAGAGGGATAATGGGTAATGGTGGGAATGGATTTGGACAGGGTATTGGCGGTACTCCACCTCTGTTGCATCCTCAGTCAATGATGAATCAGGGCTTTGATCCCGCATTTGGTGCTCCTATGGGTAGAATGGGCGGCTATGGAGGCTTTCCAGGTGCTCCAACACCTCCATTCTCTGGGATTCTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTCTGCCTGGAGTAGCGCCTCATGTTAATCCAGCCTTTTTTGGAAGAGGGATGCCTATGAACGGTATGGGGATGATGCCCACATCAGGAGTTGATGGGCCTAATATGGGAATGTGGTCAGATCCAAGCATGGGTGGATGGGGTGGGGAAGACCATGGTGGTGGGAGAGCTGGAGAGTCAAGTTATGGAGAGGAAGCTGCATCAGACCATCAGTATGGTGAGGTCAGTCATGATAGAGGTGGGTGGCCTAATGCCATGAGGGAAAAAGATAGAGGATCAGAAAGGGATTGGTCTGGTTCTTCTGAACGAAGGTACAGGGATGATAGAGATGCACCTAGAGAAAAAGATATGGGTCATGAACATGAATGGTCAGAAAGAAGACATCGCGATGATAGAGAAATAGGCCGTGAACGAGACAGGGAGCGTGACCGTGAACGGTCTCGAGACCGTGACCGTGAACTGTCTCGAGACCGTGAACGTGAACTTTCTCGAGACCGTGACCGTGAACGGTCTCGTGATCGTGACAGGTACAAGGAAGACAGGGACAGATATGCAGACCATCATAGGTACAGAGACCGTGAAGCAGAACATGATGAAGAGTGGGACCGGGGACGGTCATCAAGGACCCACAGCAAGTCACGATTATCACAGGAGGAGGATAATCACTCTAGATCAAGAGATGCTGATTATGGGAAGCGGCGAAGGCTGACCTCTGAGTAA 2199 0.507 MDEGEGGFGESGDPMDQFHRNEAISAVADDGFLAEEEDDYEDLYNDVNVGEGFLQSLRKNDDLGFRNEAVEEKKTLPAVVPPEAGGVSIPGVGVGGGNGTSDEAAAPGAAAGGGGGGGGGVVMDGSSRVSGRADGIQNQGFRGNEMGVKLSGGSGNSIGVGGGIRVELGQPSGKLNEIEEQSANNSVGIQGMGQQPHGGVVGGVGTESLVRQGGGGGNLNRIGGNGVGNSVSGVNTVNTGGAAAVVGGGSGGGGGGGTILFVGDLHWWTTDAELEAELCKYGPVKEVKFFDEKASGKSKGYCQVEFYEPSAASACKEGMNGHMFNGRPCVVAFASPFTVKRMGEAQVSRNQQMTQSSVSQARRGPAEAGPKTGGNNITTGGNYQGGDSNRGYGRGNWGRGNNPGMGNRAPMNPMRNRAGGMGGRGIMGNGGNGFGQGIGGTPPLLHPQSMMNQGFDPAFGAPMGRMGGYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGGEDHGGGRAGESSYGEEAASDHQYGEVSHDRGGWPNAMREKDRGSERDWSGSSERRYRDDRDAPREKDMGHEHEWSERRHRDDREIGRERDRERDRERSRDRDRELSRDRERELSRDRDRERSRDRDRYKEDRDRYADHHRYRDREAEHDEEWDRGRSSRTHSKSRLSQEEDNHSRSRDADYGKRRRLTSE 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0197 732 Gene3D - 254 375 IPR012677 -
Glsi08g0197 732 SMART rrm1_1 259 332 IPR000504 GO:0003723
Glsi08g0197 732 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 329 IPR000504 GO:0003723
Glsi08g0197 732 MobiDBLite consensus disorder prediction 563 732 - -
Glsi08g0197 732 MobiDBLite consensus disorder prediction 372 386 - -
Glsi08g0197 732 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 671 IPR034772 -
Glsi08g0197 732 MobiDBLite consensus disorder prediction 81 146 - -
Glsi08g0197 732 MobiDBLite consensus disorder prediction 525 732 - -
Glsi08g0197 732 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 336 IPR000504 GO:0003723
Glsi08g0197 732 MobiDBLite consensus disorder prediction 344 409 - -
Glsi08g0197 732 SUPERFAMILY RNA-binding domain, RBD 257 350 IPR035979 GO:0003676
Glsi08g0197 732 MobiDBLite consensus disorder prediction 344 362 - -
Glsi08g0197 732 CDD RRM_CFIm68_CFIm59 260 333 - -
Glsi08g0197 732 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0197 Glsi-ChrGlsi08 1705286 1707484 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0197 08 1705286 1707484 Glsi08g0197 08 1705286 1707484 ECH