Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0060 ATGGCATGGTGTGTTGCCAGGTCCTTCCGCGCGCCGGCGATGGACGTCGGTACCCTGTGCAACCGGTCACAGTTTTCCGCAGGAGTGGACCGTGTCTCGGTGGCTGGCACCTCCTTACGCGGTTCGTCGTCTTCCAAGCGCTCTGTGCCCTTCGCTTGCTTGAGCATTTCCACTGGTTCCCGTGTCAAGGAAGCTGTTCAAACTGAAAAGGCCCCAGCTGCACTGGGGCCATATTCTCAAGCAATCAAAGTCAACAACCTTCTGTTTGTCTCAGGTGTTCTTGGTCTTGTTCCCGAGACAGGGAAGTTCATCTCTGACAGTGTTGAAGATCAAACAGAGCAGGTTCTAAAAAATATGGGGGAAATCCTGAAAGCTGGTGGGGCGAGCTACTCATCAGTTGTTAAGACAACAATTATGTTGGCCGACTTGAAGGACTTCAAGAAAGTAAATGAGATCTACGCTAAATACTTTTCTGCACCTGCCCCAGCTCGTGCAACATATCAAGTAGCTGCCTTGCCATTAGATGCCAAGATTGAAATTGAGTGTATAGCAGCATTATGA 561 0.4991 MAWCVARSFRAPAMDVGTLCNRSQFSAGVDRVSVAGTSLRGSSSSKRSVPFACLSISTGSRVKEAVQTEKAPAALGPYSQAIKVNNLLFVSGVLGLVPETGKFISDSVEDQTEQVLKNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFSAPAPARATYQVAALPLDAKIEIECIAAL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0060 186 CDD YjgF_YER057c_UK114_family 78 184 - -
Glsi08g0060 186 NCBIfam Rid family detoxifying hydrolase 63 185 IPR006056 -
Glsi08g0060 186 Gene3D - 60 186 IPR035959 -
Glsi08g0060 186 Pfam Endoribonuclease L-PSP 69 185 IPR006175 -
Glsi08g0060 186 ProSitePatterns Uncharacterized protein family UPF0076 signature. 162 180 IPR019897 -
Glsi08g0060 186 SUPERFAMILY YjgF-like 64 186 IPR035959 -
Glsi08g0060 186 PANTHER 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA 64 185 IPR006175 -
Glsi08g0060 186 FunFam Reactive Intermediate Deaminase A, chloroplastic 60 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0060 Glsi-ChrGlsi08 559721 565550 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0060 08 559721 565550 Glsi08g0060 08 559721 565550 ECH