Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi07g0617 | ATGGCGGAGAAAGCATGCATCAAGCGCCTTCAGAAGGAATATAGAGCTCTTTGTAAAGAGCCAGTGTCGCATGTTGTGGCTCGTCCATCACCAAATGATATTCTTGAGTGGCATTATGTGTTGGAAGGAAGTGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCCCCTGAATATCCATTTAAACCTCCTGGAATCAGCATGACTACACCCAATGGACGCTTCATGACACAAAAAAAGATCTGCTTGTCCATGAGTGATTTTCATCCAGAAAGTTGGAATCCTATGTGGTCTGTATCAAGCATACTTACTGGACTTCTTTCATTCATGATGGACAACAGTCCAACCACTGGCAGTGTCAACACTACTACTGCTGAGAAGCAGCGTCTAGCCAAAACCTCCCTTGCATTCAATTCAAAGAATGCAACTTTCAGGAAAATGTTTCCCGAGTATGTGGATAAGTACAACCAGCAGCAGCTTTCTGAGCAAGTTGCTTCCAAGCGAATGGCATCAGAGGCATCTCATAATGAAAGTTCACGGTCCATGTTGAGAAAGGTTTTGGAGTCTACTGGAGAAGACACGGAAATAGTAGATGAGTTGAATGGTGCTAGAAAAAGCAAAAAACAATCTTTTCCGACGTGGATGATGTTATTGCTCTTCTCCATCTTTGGGGTTGTAATGGCATTGCCTCTGCTTCAGCTGTGA | 720 | 0.4306 | MAEKACIKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPFKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKTSLAFNSKNATFRKMFPEYVDKYNQQQLSEQVASKRMASEASHNESSRSMLRKVLESTGEDTEIVDELNGARKSKKQSFPTWMMLLLFSIFGVVMALPLLQL | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi07g0617 | 239 | Pfam | Ubiquitin-conjugating enzyme | 9 | 132 | IPR000608 | - | |
| Glsi07g0617 | 239 | Gene3D | Ubiquitin Conjugating Enzyme | 1 | 180 | IPR016135 | - | |
| Glsi07g0617 | 239 | SUPERFAMILY | UBC-like | 6 | 153 | IPR016135 | - | |
| Glsi07g0617 | 239 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 5 | 162 | IPR000608 | - | |
| Glsi07g0617 | 239 | PANTHER | UBIQUITIN-CONJUGATING ENZYME E2 | 7 | 149 | - | - | |
| Glsi07g0617 | 239 | SMART | ubc_7 | 8 | 162 | - | - | |
| Glsi07g0617 | 239 | FunFam | Ubiquitin-conjugating enzyme E2 34 | 1 | 177 | - | - | |
| Glsi07g0617 | 239 | CDD | UBCc | 7 | 157 | IPR000608 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi07g0617 | Glsi-ChrGlsi07 | 5440962 | 5443459 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi07g0617 | 1 | 239 | Miscellaneous Gene Families | AT1G17280 | 75.732 | 9.76e-138 | 384 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Glsi07g0617 | 07 | 5440962 | 5443459 | Glsi07g0617 | 07 | 5440962 | 5443459 | ECH |