Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0542 ATGACGGTCTCTACTATAGTTTTATACGCTAGCCCACCAAGCACTGTGTGTTCGACGCCGTATCCTTGCCACATCAACGCGCATGCGTCTTGTGACTTCGAACTGGGTTCACGATCTTCGTCATCGTCGTCTTCGACGACGGCATCCTCATCTCAAAAGCCAGCAATGAGTGGCCTATCGTGTCTGTTCTCCTCGCCGACAGTGAAGCATGTTCCAATATCGAGCTTTTCCGGTGCTGGAGAGGAGTTGGGTTCTTTGTGGCATGATAAAGGGGAAGAATTAAAGGAATTTAGCAGCTCCTTTTCCTATTCGCCGAGTAAATTTGCTGGGTCTTCTTGGAAAAGGGATCAGAGCCCAGTTTCGGTTTTCCAAGGTCCTGTTTCGTGTAGCAGTAGCGCTGTTGGTTCCGCACGGAGTCCGCCAATGAAGATCGGATGTGAAAGGGGAAGGGATGTGAATTATCATTGCTCAATTCGTGGTGGGACCAGTGGATTGTTAGATGGTTTTGTGAGAAACGCATTGGGGTCCTGCTTGGATTACGATTCGCCAAGTTTCGAGGTGCGTGGTGGTGACTTAGATGTGGATTCTTCTTCTTCTTCTTCCTTAGTGGATGAATTGACCTTCAATTTGGAGGATGCTTTTCTGGAGGGAAGTTTCGACCCATACGCTAGAGAATTGCTTCTGGGTGCCCAGTTGAGGCACAAGGTCTTTTGTGAAGAATTCGTCATTAAGGCTTTTTATGAAGCCGAGAAAGCACACAGAGGGCAGATGCGAGCTACAGGTGATCCGTATTTGCAGCATTGTGTGGAAACAGCAGTTCTGCTTGCTTTGATTGGTGCCAATTCCACAGTTGTTGCTGCAGGGCTGTTGCATGACTCACTTGATGATTCACATCTGACTTACGATTACATATTTGGGGTATTTGGCGCTGGGGTTGCTGATTTGGTTGAAGGGGTTTCGAAGCTAAGTCACTTGAGCAAGCTTGCACGGGAAAATAATACAGCTAACAAGTCAGTTGAGGCAGACCGACTGCATACCATGTTCCTTGCCATGGTTGATGCAAGAGCTGTCCTCGTCAAATTAGCAGATCGATTACATAATATGATGACACTAGATGCATTGCCAGTGGCCAAGCAACAAAGGTTTGCAAAGGAGACCTTGGAAATTTTTGCACCTGTGGCCAATCGGTTGGGAATATCTAGTTGGAAGGAACAATTAGAAAACTTGTGTTTTAAGCATCTTAACCCAGACCAGCACAATGAGATGTCTTCAAAACTTGTGGAGTCGTTTGATGATGCAATGATTACTTCTGCTATAGAGAAATTAGAGCAAGCACTCAAAAATGAAGGCATCTCTAATCATGTCCTTTCTGGGCGGCACAAGAGCTTGTATAGCATTTATTGCAAAATGCTGAAGAAGAAGCTAACCTTGGATGACATCCATGATATTTATGGGCTGCGCTTAATTGTTGATACGGAGGAAGAATGTTATAAAGCCTTGAGAGTTGTACACCGGTTATGGTCTGAGGTACCTGGAAAGCTGAAAGACTACATAAGTCGTCCCAAGTTCAATGGGTATCAATCTCTGCATACTGTAGTGATGGGTGAAGGCAAGGTTCCCCTTGAAGTACAAATCCGGACAAAAGATATGCATTTGCAAGCAGAATTTGGATTTGCTGCTCATTGGAGATACAAGGAAGGTGATTGCCAGCATTCTTCGTTTGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCATTGTGAGACAATGAGTAAAGCTTGTTCATCTGTTGGATATACTGATACAGTCAAGCCACCATGCAAGTTCCCTTCCCATGCTGATGATTGCCCATATTCTTATAAACCTTGTGGTCAGGATGGCCCTGTGTTCATAATCATGATCGAGAATGATAAGATGTCTGTCCGGGAGTTTCCTGCAAACTCGACAGTAATGGATTTATTGGAAAGAGCTGGGAGAGGAAGCTCTAAATGGACCCCATATAGATTTCCCCTGAAGGAAGAATTGAGGCCAAGGCTGAATTATGAGCCTGTGACTGATCCAAAGTGCAAGTTGAATATGGGAGATGTGGTGGAGCTTACACCAGCCATACCTGACAAGTCTCTGACTGAATACAGGGAAGAAATCCAGCGTATGTATAACAGAGGGCTAACTGTATCAAGCACAGTCCCTGCTGCAAGCGACATGGCTGGCTCAAGAAGTTGA 2232 0.4552 MTVSTIVLYASPPSTVCSTPYPCHINAHASCDFELGSRSSSSSSSTTASSSQKPAMSGLSCLFSSPTVKHVPISSFSGAGEELGSLWHDKGEELKEFSSSFSYSPSKFAGSSWKRDQSPVSVFQGPVSCSSSAVGSARSPPMKIGCERGRDVNYHCSIRGGTSGLLDGFVRNALGSCLDYDSPSFEVRGGDLDVDSSSSSSLVDELTFNLEDAFLEGSFDPYARELLLGAQLRHKVFCEEFVIKAFYEAEKAHRGQMRATGDPYLQHCVETAVLLALIGANSTVVAAGLLHDSLDDSHLTYDYIFGVFGAGVADLVEGVSKLSHLSKLARENNTANKSVEADRLHTMFLAMVDARAVLVKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPVANRLGISSWKEQLENLCFKHLNPDQHNEMSSKLVESFDDAMITSAIEKLEQALKNEGISNHVLSGRHKSLYSIYCKMLKKKLTLDDIHDIYGLRLIVDTEEECYKALRVVHRLWSEVPGKLKDYISRPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVVTWHCETMSKACSSVGYTDTVKPPCKFPSHADDCPYSYKPCGQDGPVFIIMIENDKMSVREFPANSTVMDLLERAGRGSSKWTPYRFPLKEELRPRLNYEPVTDPKCKLNMGDVVELTPAIPDKSLTEYREEIQRMYNRGLTVSSTVPAASDMAGSRS 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0542 743 Gene3D Hypothetical protein af1432 230 415 - -
Glsi07g0542 743 SUPERFAMILY Nucleotidyltransferase 405 595 IPR043519 -
Glsi07g0542 743 ProSiteProfiles HD domain profile. 264 368 IPR006674 -
Glsi07g0542 743 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 97 709 - -
Glsi07g0542 743 SMART RelA_SpoT_2 458 568 IPR007685 GO:0015969
Glsi07g0542 743 Pfam HD domain 247 399 - -
Glsi07g0542 743 FunFam GTP pyrophosphokinase RelA 226 415 - -
Glsi07g0542 743 FunFam GTP pyrophosphokinase RelA 416 548 - -
Glsi07g0542 743 Gene3D Beta Polymerase, domain 2 419 548 IPR043519 -
Glsi07g0542 743 CDD NT_Rel-Spo_like 438 556 IPR007685 GO:0015969
Glsi07g0542 743 CDD HDc 262 390 IPR003607 -
Glsi07g0542 743 SMART hd_13 260 377 IPR003607 -
Glsi07g0542 743 Pfam Region found in RelA / SpoT proteins 458 567 IPR007685 GO:0015969
Glsi07g0542 743 ProSiteProfiles S4 RNA-binding domain profile. 681 717 - -
Glsi07g0542 743 SUPERFAMILY HD-domain/PDEase-like 225 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0542 Glsi-ChrGlsi07 4808930 4812516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0542 265 567 EF-hand Containing Proteins AT3G17470 29.846 2.31e-37 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0542 07 4808930 4812516 Glsi07g0542 07 4808930 4812516 ECH