Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0396 ATGAACGGTGGCGATGAGGTCGTCGCAGCTCCGGCGGGTCCACCGCAGCCGCTGGAGTGGAAATTCTCTCAGGTTTTTGGCGAACGTACGGCCGGGGAAGAAGTTCAGGAAGTGGACATAATTTCTGCCATTGAATTTGACAAGTCTGGTGACCATCTAGCTACTGGTGATCGCGGTGGTCGAGTTGTTCTCTTTGAGAGGACAGATACAAAGGATCATGGAGGATCAAGAAGGGATTTGGAGACGATGGACTATTCTCTAAGTAGGCATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAACCTGAGTTTGACTATCTTAAGAGCTTGGAAATTGAAGAGAAAATCAACAAAATTAGATGGTGCCAAACAGCTAATGGTGCTCTATTTCTTCTATCTTCAAATGATAAAACCATAAAATTTTGGAAGGTCCAAGAAAAGAAGGTCAAGAAAATTTCTGACATGAATGTTGACCCTTCAAAAGCTATGGGAAATGGCTGTATAGCTAGTTCAAGCAATTCAAGTAGCCCTAGGCCATATCTTGCAAATGGAGGATCTCCAGATAAATCACACAGTTATCTAAGCAATGACTTCTCATTTCCACCTGGGGGCATCCCATCATTACGGTTACCCGTGGTAGTACCTGGCCATGAGACCAGCCTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATCAACTCTATTTCAAATAACAGTGATGGCGAAACTTTCATATCAGCCGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAACATGGAGGATTTGACTGAGGTTATAACTTCGGCAGAGTTCCACCCCACACATTGCAACACGTTGGCCTATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGTCCCTGGTTCCAGATCATTTTTTACGGAGATTATTGCTTCTATCTCAGACATAAAATTTGGGAAGGATGGAAGATACATACTTAGCCGTGATTACATGACTCTAAAGTTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACTTTCCAGGTTCATGAGTATTTAAGACCTAAGCTGTGTGATTTATATGAAAACGATTCAATTTTTGATAAATTTGAGTGTTGTCTGAGTGGTGACGGATTGCGTGTAGCAACTGGTTCTTACAGCAATCTTTTCCGTGTGTTTGGTTGTACCCTGGGAAGTCCTGAGGCTTCAACTTTGGAAGCCAGTAAAAATCCAATGAGGCGACAAGTTCCGACCCCTTCAAGGCCTTCTAGATCACTGGGTAGTATAACAAGGGTTGTAAGACGAGGAGCTGAAAGCCCTGGTGTTGATGCAAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCACCCTACTGAAAATTCAATTGCCTGTGCTGCTGCAAATAGCTTGTACATGTACTACGCGTAA 1548 0.427 MNGGDEVVAAPAGPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRRDLETMDYSLSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSSNDKTIKFWKVQEKKVKKISDMNVDPSKAMGNGCIASSSNSSSPRPYLANGGSPDKSHSYLSNDFSFPPGGIPSLRLPVVVPGHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEVPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTLGSPEASTLEASKNPMRRQVPTPSRPSRSLGSITRVVRRGAESPGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0396 515 SUPERFAMILY WD40 repeat-like 39 507 IPR036322 GO:0005515
Glsi07g0396 515 Gene3D - 36 203 IPR015943 GO:0005515
Glsi07g0396 515 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 209 511 - -
Glsi07g0396 515 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Glsi07g0396 515 PIRSF PPA2_B55 11 515 IPR000009 GO:0000159|GO:0019888
Glsi07g0396 515 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 233 247 IPR018067 -
Glsi07g0396 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Glsi07g0396 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Glsi07g0396 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Glsi07g0396 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 348 375 IPR000009 GO:0000159|GO:0019888
Glsi07g0396 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 235 262 IPR000009 GO:0000159|GO:0019888
Glsi07g0396 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 402 428 IPR000009 GO:0000159|GO:0019888
Glsi07g0396 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 291 319 IPR000009 GO:0000159|GO:0019888
Glsi07g0396 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 376 401 IPR000009 GO:0000159|GO:0019888
Glsi07g0396 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 320 347 IPR000009 GO:0000159|GO:0019888
Glsi07g0396 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 263 290 IPR000009 GO:0000159|GO:0019888
Glsi07g0396 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 484 513 IPR000009 GO:0000159|GO:0019888
Glsi07g0396 515 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 197 - -
Glsi07g0396 515 MobiDBLite consensus disorder prediction 165 190 - -
Glsi07g0396 515 SMART WD40_4 274 314 IPR001680 GO:0005515
Glsi07g0396 515 SMART WD40_4 336 371 IPR001680 GO:0005515
Glsi07g0396 515 SMART WD40_4 224 263 IPR001680 GO:0005515
Glsi07g0396 515 SMART WD40_4 105 145 IPR001680 GO:0005515
Glsi07g0396 515 SMART WD40_4 31 66 IPR001680 GO:0005515
Glsi07g0396 515 SMART WD40_4 375 429 IPR001680 GO:0005515
Glsi07g0396 515 Gene3D - 216 513 IPR015943 GO:0005515
Glsi07g0396 515 MobiDBLite consensus disorder prediction 167 183 - -
Glsi07g0396 515 MobiDBLite consensus disorder prediction 442 461 - -
Glsi07g0396 515 Pfam WD domain, G-beta repeat 227 263 IPR001680 GO:0005515
Glsi07g0396 515 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 515 IPR000009 GO:0000159|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0396 Glsi-ChrGlsi07 2783035 2792133 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0353 06 2898553 2905749 Glsi07g0396 07 2783035 2792133 CCT
Glsi07g0396 07 2783035 2792133 Glsi06g0353 06 2898553 2905749 ECH
Glsi07g0396 07 2783035 2792133 Glsi07g0396 07 2783035 2792133 ECH