Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0228 ATGGCGTCCGGGTCGGCTTCTCTAATGTGGTTCCGAAAGGGTCTTAGAATCCATGACAACCCGGCTCTTGAATTCTCTTGCAGAGGGTCGAGTCATCTTTACCCCGTCTTCGTTATCGACCCCCATTATATGGAGCCTGACCCAAATGCATTTTCCCTCGGGTCTACGCGTGCGGGTCTGAACCGTATCAAGTTCTTGCTCGAAAGCCTTGTGGACCTTGATTTGAACCTTAAGAAGCTTGGATCGCGATTGCTGGTGCTTAAGGGTGAACCAGGCCAGGTTTTGATTCGTTGCTTGAAGGAGTGGAACGTCAGGAAGCTATGTTTTGAGTATGACACTGAACCATATTATCAGGCTCTAGACACTAAAGTCAAGAACTATGCAGTTGCAGCTGGAGTTGAGGTCTTCTCTCCTGTAAGCCACACACTCTTCAATCCCGCGGATATTATACAGAAGAATGGAGGGAAGCCACCCCTTAGTTATCAGTCATTTGTGAAGCTTGCTGGGCAACTTTCATCCCCTTTCTCAACCACAGTTACATCACTCCCTCCAGTTGGCCATTTTGGAAGTTGTGAGATTTCTGAAGTTCCAACAATCAAAGAGCTTGGATATGGAAATGTCAAACAGGATGTATTCTCTCCTTTCAAAGGTGGTGAATCAGAAGCACTGAAGAGGCTGACAGAATGCATGAAAAACAAGGAGTGGGTCGCAAACTTTGAGAAACCCAAGGGTAATCCATCTTCATTTCTAAGACCAGAAACAACTGTTCTATCACCTTACTTGAAATTTGGTTGTCTCTCCTCCAGATATTTATACCATCACATTCAAGATGTATATAAATCTGTGCCAAAGCATACATCACCACCTGTTTCTCTTCTGGGACAGTTGTTGTGGCGAGACTTTTTCTATACGGTGGCTTTTGGGACTCCAAATTTTGATAGGATGAAAGACAATAGAATATGCAAGCAGATTCCTTGGATGGATGACGACAAACTTCTGGAGGCTTGGAGGGAAGGTAGGACGGGATTTCCTTGGATTGATGCCATCATGGTTCAGCTACACCAATGGGGTTGGATGCACCATCTGGCACGGCATTCTGTTGCATGTTTTCTTACTCGTGGTGATCTGTTCATTCATTGGGAAAAAGGGCGTGATGTGTTTGAGAGGCTTCTCATTGATTCAGATTGGGCTATTAATAATGGAAACTGGCTTTGGCTGTCTTGTTCATCCTTCTTTTATCAGTATAATCGTATTTATTCTCCAATCTCATTTGGGAAGAAGTATGACCCTAAAGGCGACTTCATCAGGCATTTTCTCCCTGTCTTAAAAGATATGCCCAAGGAGTACATTTATGAACCATGGACTGCTCCTCTAAGCGTTCAGACCAAAGCAAATTGCATAATTGGCAAAGACTACCCAATGCCAGTTGTTTCTCATGATTCTGCAAGCAAGGAGTGCCGAAGGAAAATGGGTGACGCATATGCCTTGAACCAGAAACTGAATGGTTTGGTAAGCGAAGAAGATTTGAAAAACTTGAGGAGGAAATTAGATGAAGGTAAAGAGGAAGAGCCCAAAAAGAAAAGATTTAGACAGCAGTTGATTGGGTGA 1608 0.4391 MASGSASLMWFRKGLRIHDNPALEFSCRGSSHLYPVFVIDPHYMEPDPNAFSLGSTRAGLNRIKFLLESLVDLDLNLKKLGSRLLVLKGEPGQVLIRCLKEWNVRKLCFEYDTEPYYQALDTKVKNYAVAAGVEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFVKLAGQLSSPFSTTVTSLPPVGHFGSCEISEVPTIKELGYGNVKQDVFSPFKGGESEALKRLTECMKNKEWVANFEKPKGNPSSFLRPETTVLSPYLKFGCLSSRYLYHHIQDVYKSVPKHTSPPVSLLGQLLWRDFFYTVAFGTPNFDRMKDNRICKQIPWMDDDKLLEAWREGRTGFPWIDAIMVQLHQWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPISFGKKYDPKGDFIRHFLPVLKDMPKEYIYEPWTAPLSVQTKANCIIGKDYPMPVVSHDSASKECRRKMGDAYALNQKLNGLVSEEDLKNLRRKLDEGKEEEPKKKRFRQQLIG 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0228 535 Pfam FAD binding domain of DNA photolyase 294 490 IPR005101 -
Glsi07g0228 535 Gene3D HUPs 1 140 IPR014729 -
Glsi07g0228 535 FunFam Cryptochrome-1 310 532 - -
Glsi07g0228 535 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 310 534 - -
Glsi07g0228 535 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 4 189 IPR036155 -
Glsi07g0228 535 Gene3D - 141 308 - -
Glsi07g0228 535 PANTHER CRYPTOCHROME 6 498 IPR002081 -
Glsi07g0228 535 MobiDBLite consensus disorder prediction 515 535 - -
Glsi07g0228 535 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 209 495 IPR036134 -
Glsi07g0228 535 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 143 IPR006050 -
Glsi07g0228 535 Pfam DNA photolyase 7 169 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0228 Glsi-ChrGlsi07 1440745 1444788 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0228 07 1440745 1444788 Glsi07g0228 07 1440745 1444788 ECH