Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0154 ATGCTCAGAGGCCCCTCCAAGAAAGTTTGTCGTTACCTGCGGGATCTCAACCCATTTGCTATTGCTCATTTTAGTGCGTTTCTAATCGAAGCCGGAGCAGTTACGATGTCGTCTCTCAGTAGAGAATTGGTGTTCTTGATTTTACAGTTTCTTGATGAGGAAAAGTTCAAAGAGACTGTTCATAAGCTTGAACAGGAGTCTGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGCAATTGGGATGAGGTTGAAAGATACCTCTCTGGTTTCACAAAAGTTGACGATAATAGGTATTCAATGAAAATATTTTTTGAGATAAGGAAGCAGAAGTACCTCGAGGCATTAGATAAGCACGACAGGTCCAAGGCGGTAGAAATATTGGTGAAGGATTTGAAAGTTTTTGCCACGTTCAATGAAGATCTATTCAAGGAAATCACACAGCTCTTGACATTGGAGAACTTTAGGGAAAATGAACAATTGTCAAAGTATGGTGATACCAAGTCTGCAAGGGCAATCATGTTGGTTGAGCTTAAAAAGCTAATTGAAGCAAATCCCTTATTCCGTGACAAATTGCAGTTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGCTTGAATTGGCAACATCAACTTTGTAAGAACCCGCGGCCAAATCCAGATATAAAAACTCTTTTTGTGGATCATTCATGTGGACAACCAAATGGTGCACGGGCTCCATCACCCGCTAATAATCCTCTACTTGGATCCTTACCAAAGGCTGGAGGGTTTCCTCCACTTGGTGCTCATGGGCCTTTTCAGCCCACGCCAGCACCAGTGCCAACACCCCTGGCAAGTTGGATATCAAATCCTACCACTGTAGCTCATGCTGCAGTTTCTGGAGGAGGAGCTATAGGTCTTGGTGCTCCATCAATCCCTGCTGCTTTGAAGCACCCAAGGACCCCTCCAACTAACCCTTCCGTTGACTACCCATCTGGAGATTCTGATCATGTTTCTAAGAGAACAAGGACAATGGGAATGTCGGAGGAGATGAATCTACCTGTCAATGTGTTGCCAGCAACATTCCCAAGTCATGGGCATGGCCAATCTTTTAATGCACCAGATGACTTACCAAAGACCGTCACACGAACTCTGAATCAGGGTTCATCTCCTATGAGCATGGATTTTCATCCAGTTCAACAGAGTTTACTTCTTGTTGGTACCAATGTGGGAGACATTGCTTTGTGGGAAGTGGGTTCTCGAGAGCGACTGGTCTCGAGGAACTTCAAAGTTTGGGATCTTAGTGCTTGTTCAATGCCACTTCAGGCTGCTCTTGTCAAAGATCCAAGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCAAGGCATATTGTTCAGATACACGCTTACCATGGTGGGGATGACGTGCGGCAGCACCTGGAGATTGATGCTCATGCTGGTGGAGTGAACGATCTAGCATTTTCCCACCCAAATAAGCAACTATGTGTCATAACCTGTGGTGATGACAAGACCATTAAGGTGTGGGATGCTGCTACGGGTGTAAAACAGTATACTTTCGAAGGTCATGAGGCTCCGGTCTATTCTGTTTGCCCTCATTATAAAGAAAACATTCAGTTCATATTTTCAACAGCATTAGATGGAAAGATAAAAGCATGGCTGTATGACAATTTGGGGTCTCGTGTTGATTACGATGCTCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCAGATGGTACAAGGCTCTTTTCATGTGGGACAAGCAAAGATGGGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTCAAAAGGACTTATCATGGATTTCGTAAACGATCTTTAGGTGTTGTGCAATTTGATACTACAAAGAATCGATTCTTGGCAGCTGGTGATGATTTCTCCATTAAATTCTGGGATATGGACAATGTTCAACTTTTGACAACAATTGATGCTGATGGAGGTCTACCTGCAAGCCCACGCATCCGCTTCAACAAGGATGGAACTCTCTTAGCTGTTTCTGCAAATGAGAATGGGATTAAAATTTTAGCCAATGCAGAAGGCATTCGATTGTTGCGTACAGTAGAGAATTCTTTATATGAGGCATCAAGAACATCTGAAGCCATGGCAAAGCCTACAATAAATCCAATTTCCGCTGCTGCAACTAGTGCTGCACTTGCAGAGAGGGGCTCATCTGTTATAGCTATTATGAATGGGGATTCCCGGAAACTGGGTGATGTCAAACCTAGAATAAGTGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTACCGGAGAACCTAAGAGTAACCAAGATATCTAGGTTGATATATACAAATTCAGGTAATGCCATACTGGCATTAGCATCAAATGCCATTCATTTGCTCTGGAAATGGCAGCGAAGTGACCGCCACTCATCTGGCAAGGCCACTGCTAGCGTGTTACCTCACTTGTGGCAACCATCAAGTGGCATCCTGATGACAAATGATGTTACTGACATCAATCCGGAGGATGCTGTGCCCTGCTTTGCTCTCTCCAAAAATGATTCTTATGTAATGTCAGCATCAGGGGGGAAGATTTCCCTCTTCAATATGATGACTTTTAAGACAATGACAACTTTCATGCCTCCGCCACCTGCAGCAACTTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATTGGCATGGACGATTCTACCATTCAGATATATAATGTTCGTGTGGATGAGGTTAAAAGTAAACTCAAAGGTCACACTAAAAGAATAACTGGCCTTGCTTTCTCTCATTCATTGAATGTGCTAGTTTCATCTGGGGCAGATGCTCAGCTTTGCGTGTGGAATACTGATGAATGGGAAAAGCAGAAGACCAGATTCTTGCAGCTTCCTGCTGGGAGGACTCCAACAGCACAGGCCGAGACCCGGGTACAGTTTCATCAGGATCAGATACACTTCTTGGTTGTACATGAAACCCAGCTTGCCATATATGAAACAACAAAACTTGAGTGTCTGAAGCAGTGGTTCCCAAGAGATTCTAGTGCACCAATATCAGCTGCAACTTTCTCATGTGATAGTCAGCTGATATATGCCAGCTTTTTAGATGCAGCAGTTTGTGTATTTAGTGCTGCAAACCTCATATTACGTTGTCGTATCGATCGTTCTGCTTATCTCTCTGCGAGTGTCAGTTCCAGTATACAACCACTTGTGGTCGCAGCACATCCACAAGAACCAAATCAGTTTGCTGTAGGACTGTCAGATGGTGGAGTTCATGTCTTTGAGCCCCTTGAGTCTGAAGGTAAGTGGGGTGTGCCTCCACCCATTGAGAATGGGTCAGCAAGCAATGTTGCAGCTAATTCAGTTGTAGTTTCTTCAGATCAAGCCCAGAGATGA 3492 0.4361 MLRGPSKKVCRYLRDLNPFAIAHFSAFLIEAGAVTMSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEDLFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLASWISNPTTVAHAAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVSKRTRTMGMSEEMNLPVNVLPATFPSHGHGQSFNAPDDLPKTVTRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPLQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIHAYHGGDDVRQHLEIDAHAGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGVKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYHGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTIDADGGLPASPRIRFNKDGTLLAVSANENGIKILANAEGIRLLRTVENSLYEASRTSEAMAKPTINPISAAATSAALAERGSSVIAIMNGDSRKLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENLRVTKISRLIYTNSGNAILALASNAIHLLWKWQRSDRHSSGKATASVLPHLWQPSSGILMTNDVTDINPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHTKRITGLAFSHSLNVLVSSGADAQLCVWNTDEWEKQKTRFLQLPAGRTPTAQAETRVQFHQDQIHFLVVHETQLAIYETTKLECLKQWFPRDSSAPISAATFSCDSQLIYASFLDAAVCVFSAANLILRCRIDRSAYLSASVSSSIQPLVVAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAANSVVVSSDQAQR 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0154 1163 Gene3D - 584 780 IPR015943 GO:0005515
Glsi07g0154 1163 SMART Lish 39 71 IPR006594 GO:0005515
Glsi07g0154 1163 MobiDBLite consensus disorder prediction 1136 1163 - -
Glsi07g0154 1163 MobiDBLite consensus disorder prediction 318 341 - -
Glsi07g0154 1163 FunFam Topless-related protein 3 769 1003 - -
Glsi07g0154 1163 ProSitePatterns Trp-Asp (WD) repeats signature. 513 527 IPR019775 -
Glsi07g0154 1163 Pfam WD domain, G-beta repeat 492 526 IPR001680 GO:0005515
Glsi07g0154 1163 Pfam WD domain, G-beta repeat 949 982 IPR001680 GO:0005515
Glsi07g0154 1163 SUPERFAMILY WD40 repeat-like 387 701 IPR036322 GO:0005515
Glsi07g0154 1163 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 69 127 IPR006595 -
Glsi07g0154 1163 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 535 IPR001680 GO:0005515
Glsi07g0154 1163 ProSiteProfiles Trp-Asp (WD) repeats profile. 637 668 IPR001680 GO:0005515
Glsi07g0154 1163 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 950 982 - -
Glsi07g0154 1163 SUPERFAMILY WD40 repeat-like 865 1128 IPR036322 GO:0005515
Glsi07g0154 1163 Gene3D - 839 1128 IPR015943 GO:0005515
Glsi07g0154 1163 Gene3D - 359 582 IPR015943 GO:0005515
Glsi07g0154 1163 ProSiteProfiles Trp-Asp (WD) repeats profile. 950 991 IPR001680 GO:0005515
Glsi07g0154 1163 SMART WD40_4 619 659 IPR001680 GO:0005515
Glsi07g0154 1163 SMART WD40_4 573 616 IPR001680 GO:0005515
Glsi07g0154 1163 SMART WD40_4 379 418 IPR001680 GO:0005515
Glsi07g0154 1163 SMART WD40_4 860 897 IPR001680 GO:0005515
Glsi07g0154 1163 SMART WD40_4 1034 1075 IPR001680 GO:0005515
Glsi07g0154 1163 SMART WD40_4 1092 1127 IPR001680 GO:0005515
Glsi07g0154 1163 SMART WD40_4 485 526 IPR001680 GO:0005515
Glsi07g0154 1163 SMART WD40_4 529 570 IPR001680 GO:0005515
Glsi07g0154 1163 SMART WD40_4 440 479 IPR001680 GO:0005515
Glsi07g0154 1163 SMART WD40_4 943 982 IPR001680 GO:0005515
Glsi07g0154 1163 SMART WD40_4 900 940 IPR001680 GO:0005515
Glsi07g0154 1163 ProSiteProfiles LIS1 homology (LisH) motif profile. 39 71 IPR006594 GO:0005515
Glsi07g0154 1163 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 36 1145 IPR027728 GO:0006355
Glsi07g0154 1163 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 530 - -
Glsi07g0154 1163 MobiDBLite consensus disorder prediction 1145 1163 - -
Glsi07g0154 1163 SMART ctlh 69 127 IPR006595 -
Glsi07g0154 1163 FunFam Topless-related protein 1 359 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0154 Glsi-ChrGlsi07 1018086 1026157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0154 490 703 Miscellaneous Gene Families AT5G08390 24.771 9.40e-08 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0154 07 1018086 1026157 Glsi07g0154 07 1018086 1026157 ECH