Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0026 ATGGTGACTGAGAGGCCTACGAGAATGGTGGAGAGCAGCCAAGCTAGTAAATGGCTTTCCTCAAATGTTATTTCAGCATTTGGATCATCAATAGAAAATAAGGCAACAGAGGAGTTGGAAATTTTCTTGAAGGGACAAAAGCTCCATCGAGGCCAAGCAAATTTTATTCCTAGTCGAAGTCGTAGTGCTCCACCAAGTATGGAGGGTTCAGTTGCAGCAGTTGGAAATATATTATCTGTGAAGGGTTCTTGTCTAAGTTCAAATTCAGGTTGTTTGGGCAATTCTCTTGAGGATCACAAATCTGAAGGACAATGGCTATTTGATCCTTCTTATGTTCCATTTTGCTCCTTGGAGCTCAACTTGGAACCCAAGTTTCCTTCACTGCACCTGCGAAGTCAAATTGGTAATTGTAAAGAAAATCAAGGTATCACTTCTTCAGATAATGGTGTCATGGTTTCCCTTTCTACTGATAAGGAGGAACTCAACAAAGAGGGTTCACCTGAGCAAGCTTCAGAAAACCTTTTCAAAGGCAGTAGCATACTTAAGCATGGGCAGAACGCAGCTTCATTGACTAGCCTTCACAAAAGCTTGGTAGATTTAATACAGGAAGACTTTCCCCGTACACCTTCCCCTTTGTATAACCAATCTCATTTAACAAGTCATGCTACAACTGAGGATTCAATTGATGTTGATGTGCATGCAATTTCTTCAATAGACTTCTCAAACTTGTCAGATTCAGCTACTTGTTCTACTAGTGCTGTGGAGACAGGCACCCTGAACATAAATGCTTGTGAGTTAATATCAAATGAAGTTATGCTACAAACCTTGCCAAGCTCCCAGCATTGTAATGGAACTCAAAGCCTGCTAGAGAATCCAACATGCAACAAAGATACCGGGCTGAAGGATTTTATATCAGCAAATGGAGTTATGCACACAGAGGAGCATAAATTGAGAGCACCTACTGATAGAAGACAAAAACAAGGAGAACAAAAATATTACAGTAGGAATAAGCTAAATCAATCTTTTACCCATGGCTATACTTACCAAATTCCAGGTGCAGGGACGCAAGTAATATCTCAAGGGATGAACAATTCACAAAGTTACTTGGGAATGCTTGCTCACAGTCATTCACAGTTCTCATCTCTTGGGATACAGTCATCATTTCCTTCTCCTGGAATTACAGGTCCCTTATATGTAACTCCAACAGCATTTATGACTTCAGGAAATCCATTTTATCCTAATTTTGAGTCATCTTGTTTATTCTCTCCACAATATAGTTTAGGTGGATATGCTTTGAGTTCTAGCGCAGTTATGCCATATATGGCTGGATATTCTTCTCAAGGTGACCTGCCTCTTCCATTTGAAGCTGCAAGTAGCCCAAACCTGAATGGTCAAGCTACCAGTCTTTCATCAGAAGGGGTTCCAAATGCAAGAAAATTTCAAAGTTGCAACAAGATTAATGGGCAGCATGGATTATCACTGCACCCTTCTTATGTTAATCCACTTAATATGCAGTATTATCCCCACCCTTTTGGTAATGCATATCCTGCTGCTATTCAACAGAAACAATTGGCTTCAAGAACTCTGACTGGGGGACAGGTCTGTTCACTAGCTTCACAGGAAGATTCAGCTGTTACTACTAATTTAAATGGTCAGAAACTTCAGTCTCCAGTACATGGTAGCTTGACTGTTCCCAGTTCAAAAAATATAGGAATATCTGGAAGTAGCTATTTTGGAGATTCCAGTGTGGGTGTCATGATGCAATTCCCTGCTTTGTCTCTTGGTAGTCCAATTCTTCCATCCTCACCAAGAAGTGGAACTAACCCTCTAGTTGGACAAAAGGATAAGCAGATGCCTCGTGTTTCTGGCCAAAATGCAGGATTTTTTTCTGGACAGAGAGGAACAAGGAGGTTTGATGACCCCAAGAAGCTATCTTTTATTAAGGAACTTAAGTCCATCAATTTGGGGAAGTTTGAACTCTCTGATATAGCAGGGCGTATTGTTGAATTCTGCGTTGACCAACATGGAAGTCGGTTTATCCAGCTGAAGCTGGAAAGTTGCAGTGTTGAAGAGAAGGTGTCTGTTTTTGAAGAAATCTTTCCACATGCCTCAAAATTAATGACAGATGTGTTTGGTAATTATGTGATTCAGAAGTTTTTTGCGCATGGAAGTCCTGATCAGCGAAAGAACCTTGCAGAACAACTTTCTGGACAGATTTTACCTTTAAGTTTGCAGATGTATGGTTGTCGTGTTATCCAGAAGGCCCTCGAAGTTATTGAGCTTGATCAGAAGACACTACTAGTGCAAGAGCTCGACGGGCATGTCATGAGATGTGTACATGATCAAAATGGAAATCATGTGATACAGAAATGCATAGAATGCATGCCGATGGACAAAATCCATTTTATTATATCTGCTTTCCAAGGCCAAGTTTCCTCTCTTTCTATACACCCTTATGGCTGTCGGGTTATTCAGAGAGTTTTGGAGCATTGTTCAGATGAGCAACATATTCAAATTCAATGTCTAGTGGATGAAATCCTGGAATCTGCTTGTGTCCTTTCTCAAGACCAGTACGGAAATTATGTGATGCAGCATGTCCTGGAGAGGGGAAAACCACATGAAAAAAGTCAACTTATAAGCAAATTGTCTGGGAAGATTGTACAATTGAGTCAGCATAAGTATGCTTCGAATGTTATTGAGAAGTGTCTGGAGCATGCTGATGTGATTGACAGAGAGGCCTTGATTGAGGAAATAATTGGGCAGCCTGGTGAAGGCGATAATTTATTGACAATGATGAAGGACCAGTTCGCAAATTATGTGATCCAGAAAATTCTTGAAATAAGCAACGAGAGGCATCGGGAAATACTTGTTAATCATATAAGAGTTCATATTCAATCTTTGAAGAAATACACCTATGGGAAACACATTGCTGCTCGTTTTGAACAACTTGCCAGTCCAGGAAGCGAGGCGGAGGTTTGTTGA 2982 0.4054 MVTERPTRMVESSQASKWLSSNVISAFGSSIENKATEELEIFLKGQKLHRGQANFIPSRSRSAPPSMEGSVAAVGNILSVKGSCLSSNSGCLGNSLEDHKSEGQWLFDPSYVPFCSLELNLEPKFPSLHLRSQIGNCKENQGITSSDNGVMVSLSTDKEELNKEGSPEQASENLFKGSSILKHGQNAASLTSLHKSLVDLIQEDFPRTPSPLYNQSHLTSHATTEDSIDVDVHAISSIDFSNLSDSATCSTSAVETGTLNINACELISNEVMLQTLPSSQHCNGTQSLLENPTCNKDTGLKDFISANGVMHTEEHKLRAPTDRRQKQGEQKYYSRNKLNQSFTHGYTYQIPGAGTQVISQGMNNSQSYLGMLAHSHSQFSSLGIQSSFPSPGITGPLYVTPTAFMTSGNPFYPNFESSCLFSPQYSLGGYALSSSAVMPYMAGYSSQGDLPLPFEAASSPNLNGQATSLSSEGVPNARKFQSCNKINGQHGLSLHPSYVNPLNMQYYPHPFGNAYPAAIQQKQLASRTLTGGQVCSLASQEDSAVTTNLNGQKLQSPVHGSLTVPSSKNIGISGSSYFGDSSVGVMMQFPALSLGSPILPSSPRSGTNPLVGQKDKQMPRVSGQNAGFFSGQRGTRRFDDPKKLSFIKELKSINLGKFELSDIAGRIVEFCVDQHGSRFIQLKLESCSVEEKVSVFEEIFPHASKLMTDVFGNYVIQKFFAHGSPDQRKNLAEQLSGQILPLSLQMYGCRVIQKALEVIELDQKTLLVQELDGHVMRCVHDQNGNHVIQKCIECMPMDKIHFIISAFQGQVSSLSIHPYGCRVIQRVLEHCSDEQHIQIQCLVDEILESACVLSQDQYGNYVMQHVLERGKPHEKSQLISKLSGKIVQLSQHKYASNVIEKCLEHADVIDREALIEEIIGQPGEGDNLLTMMKDQFANYVIQKILEISNERHREILVNHIRVHIQSLKKYTYGKHIAARFEQLASPGSEAEVC 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0026 993 Gene3D - 642 987 IPR011989 -
Glsi07g0026 993 ProSiteProfiles Pumilio RNA-binding repeat profile. 845 880 IPR001313 GO:0003723
Glsi07g0026 993 SUPERFAMILY ARM repeat 658 980 IPR016024 -
Glsi07g0026 993 ProSiteProfiles Pumilio RNA-binding repeat profile. 917 958 IPR001313 GO:0003723
Glsi07g0026 993 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 378 982 - -
Glsi07g0026 993 ProSiteProfiles Pumilio RNA-binding repeat profile. 881 916 IPR001313 GO:0003723
Glsi07g0026 993 ProSiteProfiles Pumilio RNA-binding repeat profile. 806 844 IPR001313 GO:0003723
Glsi07g0026 993 ProSiteProfiles Pumilio RNA-binding repeat profile. 662 697 IPR001313 GO:0003723
Glsi07g0026 993 CDD Pumilio 657 979 IPR033712 GO:0003723
Glsi07g0026 993 ProSiteProfiles Pumilio RNA-binding repeat profile. 698 733 IPR001313 GO:0003723
Glsi07g0026 993 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 642 984 IPR033133 GO:0003723
Glsi07g0026 993 ProSiteProfiles Pumilio RNA-binding repeat profile. 734 769 IPR001313 GO:0003723
Glsi07g0026 993 SMART pum_5 806 841 IPR001313 GO:0003723
Glsi07g0026 993 SMART pum_5 881 916 IPR001313 GO:0003723
Glsi07g0026 993 SMART pum_5 770 805 IPR001313 GO:0003723
Glsi07g0026 993 SMART pum_5 662 697 IPR001313 GO:0003723
Glsi07g0026 993 SMART pum_5 734 769 IPR001313 GO:0003723
Glsi07g0026 993 SMART pum_5 698 733 IPR001313 GO:0003723
Glsi07g0026 993 SMART pum_5 845 880 IPR001313 GO:0003723
Glsi07g0026 993 SMART pum_5 923 958 IPR001313 GO:0003723
Glsi07g0026 993 FunFam Pumilio homolog 1 isoform 2 641 990 - -
Glsi07g0026 993 ProSiteProfiles Pumilio RNA-binding repeat profile. 770 805 IPR001313 GO:0003723
Glsi07g0026 993 Pfam Pumilio-family RNA binding repeat 853 882 IPR001313 GO:0003723
Glsi07g0026 993 Pfam Pumilio-family RNA binding repeat 781 805 IPR001313 GO:0003723
Glsi07g0026 993 Pfam Pumilio-family RNA binding repeat 738 771 IPR001313 GO:0003723
Glsi07g0026 993 Pfam Pumilio-family RNA binding repeat 703 735 IPR001313 GO:0003723
Glsi07g0026 993 Pfam Pumilio-family RNA binding repeat 666 699 IPR001313 GO:0003723
Glsi07g0026 993 Pfam Pumilio-family RNA binding repeat 810 846 IPR001313 GO:0003723
Glsi07g0026 993 Pfam Pumilio-family RNA binding repeat 886 919 IPR001313 GO:0003723
Glsi07g0026 993 Pfam Pumilio-family RNA binding repeat 927 960 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0026 Glsi-ChrGlsi07 216713 227550 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0026 07 216713 227550 Glsi07g0026 07 216713 227550 ECH