Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1914 ATGACAGAGGAGAGGGCCGTAGTAACATGGCGGAAAATCCCCACTCTGAAGAAAAACTCTCACTACGCGTACGGCCATGAACCGCTTTGGAAGAAGACCAGCCTGACTTTCAGTGCTCCCAGTGGCACTTCCTGTAATTTCGCATGTGTTTCGGTGGCAGAAAGGAAGCTGGATAAGGAGTTCTTGCCGACGCCGGCTCAGCTCTTGAAGCATCCACTGGCTGTCGTCGCATTGTTGCCCAAAGACGCCGCGCTCTTCTTCGCTGGAGCCATCGCTGGCGCCGCTGCGAAGACCGTCACGGCTCCGCTGGACCGTATTAAGATTCTTATGCAGACTCATGGGGTGCGAGTTGGGCAAGAAAGTGCTAAGAAAGCAATCGATTTCATTGAGGCCATAACAGTAATAGGGAAGGAAGAAGGCATTAAAGGCTACTGGAAGGGCAACCTCCCCCAGGTTATTCGGGTCATACCTTATAGTGCTGTCCAGCTCTTTGCTTATGAATTTTATAAGAAAATATTTAGGGGAAAGAATGGTGAGCTCTCTGTTATTGGAAGACTTGCAGCAGGTGCTTTTGCTGGCATGACATCCACTTTTATAACTTACCCATTAGATGTCCTGAGATTACGACTAGCAGTTGAACCAGGTTATCGAACCATGTCACAGGTTGCCTTGAGCATGCTCAGAGAGGAAGGTTTTGCATCATTCTATTTCGGCCTTGGGCCTTCTCTTATTGGAATAGCTCCTTATATTGCAGTAAACTTTTGTGTTTTTGACTTATTAAAGAAGTCTTTGCCAGAGAAGTATCAAAAGAGAACTGAAACGTCTCTACTGACAGCTGTGCTTTCGGCATCTCTAGCAACGCTTACATGCTATCCTCTTGACACAGTGCGAAGGCAGATGCAATTGAAGGGTACACCTTATAAGACAGTGTTAGATGCACTTTCAGGTATCGTGGTCCGGGATGGAGTTATTGGCTTGTATCGGGGTTTTGTACCCAATGCTTTGAAGACGCTACCAAACAGCAGCATCAGGCTTACCATATATGACATTGGTAAACGCCTAATAGCAGCTGGTGAGAAGGAATTTCAAACAATTACAGATGAAAATGGCAAGAAGCAAAACAGCACAAATAAACAATATTGA 1143 0.4611 MTEERAVVTWRKIPTLKKNSHYAYGHEPLWKKTSLTFSAPSGTSCNFACVSVAERKLDKEFLPTPAQLLKHPLAVVALLPKDAALFFAGAIAGAAAKTVTAPLDRIKILMQTHGVRVGQESAKKAIDFIEAITVIGKEEGIKGYWKGNLPQVIRVIPYSAVQLFAYEFYKKIFRGKNGELSVIGRLAAGAFAGMTSTFITYPLDVLRLRLAVEPGYRTMSQVALSMLREEGFASFYFGLGPSLIGIAPYIAVNFCVFDLLKKSLPEKYQKRTETSLLTAVLSASLATLTCYPLDTVRRQMQLKGTPYKTVLDALSGIVVRDGVIGLYRGFVPNALKTLPNSSIRLTIYDIGKRLIAAGEKEFQTITDENGKKQNSTNKQY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1914 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 270 354 IPR018108 -
Glsi06g1914 380 PRINTS Mitochondrial carrier protein signature 147 167 IPR002067 GO:0055085
Glsi06g1914 380 PRINTS Mitochondrial carrier protein signature 236 254 IPR002067 GO:0055085
Glsi06g1914 380 PRINTS Mitochondrial carrier protein signature 98 112 IPR002067 GO:0055085
Glsi06g1914 380 PRINTS Mitochondrial carrier protein signature 85 98 IPR002067 GO:0055085
Glsi06g1914 380 PRINTS Mitochondrial carrier protein signature 195 213 IPR002067 GO:0055085
Glsi06g1914 380 PRINTS Mitochondrial carrier protein signature 279 301 IPR002067 GO:0055085
Glsi06g1914 380 FunFam Envelope ADP,ATP carrier protein 82 360 - -
Glsi06g1914 380 Pfam Mitochondrial carrier protein 85 176 IPR018108 -
Glsi06g1914 380 Pfam Mitochondrial carrier protein 179 266 IPR018108 -
Glsi06g1914 380 Pfam Mitochondrial carrier protein 274 356 IPR018108 -
Glsi06g1914 380 SUPERFAMILY Mitochondrial carrier 83 349 IPR023395 -
Glsi06g1914 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 80 172 IPR018108 -
Glsi06g1914 380 PANTHER SOLUTE CARRIER FAMILY 25 81 355 - -
Glsi06g1914 380 Gene3D Mitochondrial carrier domain 82 360 IPR023395 -
Glsi06g1914 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 180 263 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1914 Glsi-ChrGlsi06 66311180 66316424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1914 1 375 Organic Solute Cotransporters AT3G51870 68.158 0.0 516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g2030 07 64505040 64511353 Glsi06g1914 06 66311180 66316424 CCT
Glsi06g1914 06 66311180 66316424 Glsi06g1914 06 66311180 66316424 ECH