Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0339 ATGGGCTTCTTCACGTGGGTAAGTACGATCATTATCTTCCATTTCTTTGCTGCAACACCCATATCGTCTGATTCCTCCTTGAGCTCAAACGAACTCTCAGCGATTCCGACCAAGTTTTTAAATTTTGCCAAGAAGCCTGAGGTTTTTGACTGGATGGTCAAAATCAGAAGGAACATTCATGAGAATCCAGAATTGGGTTATGAGGAATTTGAGACCAGTGAGCTGATAAGAGCAGAATTAGATAAATTGGGAATCTCATATAAATACCCAGTTGCAATCACCGGTGTTATTGGCTACATAGGGAGCGGACGGCCGCCTTTTGTTGCTATAAGAGCGGATATGGATGCTCTTGCTATGCAGGAAATGGTAGAGTGGGATCACAAGAGTAAAGTACCTGGAAAAATGCATGCTTGTGGACATGATGCTCATGTCACAATGCTTCTTGGTGCTGCAAAGATCCTCAAAGAGCATGAAAAAGAGATACAGGGAACTGTTGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGGAGGGGCTAAGAAGATTTTAGATGCTAAAGCCTTAGAAAATGTCAATGCTATCTTTGGATTGCATGTTTCACCCGATTTACCCATAGGTGAAGTGGCCTCTAGATCTGGTCCGCTATTGGCAGGAAGTGGCTTCTTTGAAGCAGTGATAAGTGGGAAGGGAGGTCATGCAGCTATTCCCCAGCACTCTATAGACCCCATATTGGCGGCTTCTAATGTGATTGTTAGCTTACAACATCTTGTTTCTCGTGAGGCTGATCCTCTGGACTCCCAGGTTGTGACAATAGCAAAATTCCAAGGAGGTGGTGCATTCAATGTTATTCCAGATTCTGTCACAATTGGTGGCACATTCCGAGCTTTTTCAAAAGAAAGTTTCATGCAACTAAGAGAGCGGATTGAGCAGGTTGTCACTGGGCAAGCTGCTGTACAGAGGTGCAATGCAACGGTTAACTTTCTTGAAGAAAAGAGACCTTTCTTCCCTCCAACTGTAAATGACGTTGTCTTGCACGAGCATTTTCAACACGTTGCAGGGGATATGCTTGGCATAAAAAAAGTTAAAGACGCTCAACCAGTGATGGGAGCTGAGGACTTCTCATTCTATCAAGAGGTTATACCTGGTTATTTCTTCTTTCTTGGAATGAAGAATGCTTCACTTGAACGGCCTGAGTCAGTACACTCAGCTAATTTCAAAGTCAATGAAGACGTTCTCCCTTATGGAGCTGCACTTCATGCATCATTAGCTGCTGGTTATCTTCTCAAACATCAGCAGGATATACAAGTAGTAGAAGGGATGTATCATGATGAATTATGA 1338 0.4327 MGFFTWVSTIIIFHFFAATPISSDSSLSSNELSAIPTKFLNFAKKPEVFDWMVKIRRNIHENPELGYEEFETSELIRAELDKLGISYKYPVAITGVIGYIGSGRPPFVAIRADMDALAMQEMVEWDHKSKVPGKMHACGHDAHVTMLLGAAKILKEHEKEIQGTVVLVFQPAEEGGGGAKKILDAKALENVNAIFGLHVSPDLPIGEVASRSGPLLAGSGFFEAVISGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTIAKFQGGGAFNVIPDSVTIGGTFRAFSKESFMQLRERIEQVVTGQAAVQRCNATVNFLEEKRPFFPPTVNDVVLHEHFQHVAGDMLGIKKVKDAQPVMGAEDFSFYQEVIPGYFFFLGMKNASLERPESVHSANFKVNEDVLPYGAALHASLAAGYLLKHQQDIQVVEGMYHDEL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0339 445 PIRSF Amidohydrol_AmhX 37 431 IPR017439 GO:0016787
Glsi06g0339 445 SUPERFAMILY Bacterial exopeptidase dimerisation domain 217 336 IPR036264 -
Glsi06g0339 445 PANTHER PEPTIDASE M20 FAMILY MEMBER 26 436 IPR017439 GO:0016787
Glsi06g0339 445 FunFam N-acetyldiaminopimelate deacetylase 217 335 - -
Glsi06g0339 445 Pfam Peptidase dimerisation domain 218 314 IPR011650 -
Glsi06g0339 445 NCBIfam amidohydrolase 52 414 IPR017439 GO:0016787
Glsi06g0339 445 Gene3D Zn peptidases 52 412 - -
Glsi06g0339 445 SUPERFAMILY Zn-dependent exopeptidases 47 429 - -
Glsi06g0339 445 CDD M20_IAA_Hyd 52 427 IPR044757 GO:0009850|GO:0016787
Glsi06g0339 445 Gene3D - 217 335 - -
Glsi06g0339 445 Pfam Peptidase family M20/M25/M40 109 423 IPR002933 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0339 Glsi-ChrGlsi06 2803357 2808119 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0339 06 2803357 2808119 Glsi07g0386 07 2697113 2702414 CCT
Glsi06g0339 06 2803357 2808119 Glsi06g0339 06 2803357 2808119 ECH