Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2221 ATGGACGGAGATAGAATCATAGAATCTTGGAAAAGACTTATTGGTGGTGATTTTTGTCTTCTCCGGCAGAAATACGTGGTCCGTCTTGGAAGTTTGGAAATTTTGCAACTGATATTGATTCACGAAGTGATATGGGAGAAGAATGATGACTTCTCTGTTGATCCATTTGAAGATTTAGAAGCTGGAGTAAGCATTTCATCTCTCTGCCCTTTAAACATTTCCCCGAAACTCCTGAACTTACTTGTGCCTCTCCTCCCAATTTCTGTTTCCTTTCCCTCTGCTTCTTCTTCTTCTTCGTCTTCGTCGTCGTCTTCCCCGTTCACCATGCCCGGCTTGGTATCCGTTAAAACGCCGCCAGACGCGCCACCCCTCCGAATCACGGTGCCCGAAACGCAAACCCCCCAGAGATCCGACTCCGCTAACCTCAAAACACCCTCTCCTCTTCCTAAGAAACCACCTTCTCCTTCACCTTCCCGAGCTAAACCCTCCCCGGATCGCAAGAAGAAGATTTCTGACTCTCCCAACCCTGTTCTTTCCGAGGCCTCGCTCGACAATCCCGATCTCGGCCCCTTCCTTCTCAAGCTCGCCCGAGATACTATTGCCTCCGGCGAAGGTCCTGCCAAGGCCTTAGACTATGCCATTCGGGCCTCCAAATCCTTTGAGCGATGCGCGCTTGATGGGGAGCCCAGCTTGGACCTCGCTATGAGTTTGCACGTCCTGGCAGCTATATACTGTAGCTTAGGCAGGTTCGAGGAGGCTGTGCCAGTGCTCGAGCGGGCGATCCAGGTTCCAGATGTCGCCAGTGGTGCGGATCACGCCCTTGCTGCTTTCTCTGGTTATATGCAATTAGGGGATACGTTCTCCATGCTTGGGCAGGTCGACAGGTCGATCTCGTGCTACGACGAAGGGCTGAAGATCCAGATCGAAGCATTGGGTGACGCGGATCCAAGAGTCGGAGAGACTTGCAGATACTTAGCGGAGGCCAATGTTCAAGCAATGCAGTTTGACAAAGCAGAGGAACTGTGCAACAAAACTCTTGAGATTCATCGGGCTCACAGTGAACCAGCATCTCTTGAAGAAGCAGCAGATAGAAGGCTTATGGCTCTTATATGTGAGGCAAAGGGAGATTACGAGTCAGCTCTTGAACACCTTGTCCTGGCCAGCATGGCAATGATTGCAAATGGACAAGACAATGAAGTTGCTGCAATTGATGTCAGTATTGGAAATATTTACTTGTCTCTTTGTCGCTTTGATGAAGCTATTTTCTCCTACCAGAAGGCACTTACTGTCTTCAAATCATCTAAGGGTGAAAACCACCCTTCAGTTGCTTCTGTTTTTGTACGCCTTGCTGATTTGTATCATAGGACTGGAAAACTGAGAGAGTCAAAATCCTATTGCGAAAATGCCCTTAGAATATACTCAAAACCAGTGCCTGGAACCACAGCAGAAGAGATTGCTAGTGGGTTGACAGAAGTTTCGGCCATTTTTGAATCTGTAGATGAGCCTGAGGAGGCACTGAAACTCTTGCAAAAGGCAATGAAGTTATTGGAGGATAAACCAGGACAGCAGAGCACAATTGCAGGAATAGAAGCTCGAATGGGTGTGATGTTTTACATGATTGGGAGGTATGAAGAAGCAAGGAACTCTTTCGAGAGTGCTGTATCAAAACTTAGAGCCAGTGGGGAAAGGAAGTCTGCCTTTTTTGGGGTAGTTTTGAACCAGATGGGGTTGGCATGTGTACAACTGTTCAAGATAGATGAGGCTGCCGAGTTATTTGAAGAAGCTAGGGGAATTCTTGAACAGGAGTGTGGCCCATGCCATCAAGATACTCTTGGAGTATACAGCAATCTTGCAGCAACTTATGATGCCATGGGAAGAGTGGGAGATGCAATTGAGATCTTGGAGTATGTCCTGAAATTGAGGGAAGAAAAGCTTGGAATAGCAAATCCTGATTTTGAAGATGAGAAGCGAAGGCTGGCTGAGCTTCTGAAAGAAGCAGGCAAGACACGAGACAGAAAAGCAAAATCTCTGGAAAACCTCATTGATCCCAGCTCAAAGAGAACAAAGAAGGAGGGGACAAAAAGGTGGCCTGGCCTGGGTTTTAGAATTTAA 2112 0.4759 MDGDRIIESWKRLIGGDFCLLRQKYVVRLGSLEILQLILIHEVIWEKNDDFSVDPFEDLEAGVSISSLCPLNISPKLLNLLVPLLPISVSFPSASSSSSSSSSSSPFTMPGLVSVKTPPDAPPLRITVPETQTPQRSDSANLKTPSPLPKKPPSPSPSRAKPSPDRKKKISDSPNPVLSEASLDNPDLGPFLLKLARDTIASGEGPAKALDYAIRASKSFERCALDGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLERAIQVPDVASGADHALAAFSGYMQLGDTFSMLGQVDRSISCYDEGLKIQIEALGDADPRVGETCRYLAEANVQAMQFDKAEELCNKTLEIHRAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAIFSYQKALTVFKSSKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIASGLTEVSAIFESVDEPEEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMFYMIGRYEEARNSFESAVSKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPSSKRTKKEGTKRWPGLGFRI 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2221 703 MobiDBLite consensus disorder prediction 146 160 - -
Glsi05g2221 703 FunFam Protein KINESIN LIGHT CHAIN-RELATED 2 563 680 - -
Glsi05g2221 703 Coils Coil 652 672 - -
Glsi05g2221 703 Pfam Tetratricopeptide repeat 400 474 - -
Glsi05g2221 703 Pfam Tetratricopeptide repeat 571 643 - -
Glsi05g2221 703 MobiDBLite consensus disorder prediction 96 183 - -
Glsi05g2221 703 Pfam MalT-like TPR region 238 387 IPR041617 -
Glsi05g2221 703 MobiDBLite consensus disorder prediction 668 703 - -
Glsi05g2221 703 MobiDBLite consensus disorder prediction 96 111 - -
Glsi05g2221 703 Gene3D Tetratricopeptide repeat domain 279 387 IPR011990 GO:0005515
Glsi05g2221 703 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 100 685 - -
Glsi05g2221 703 ProSiteProfiles TPR repeat profile. 401 434 IPR019734 GO:0005515
Glsi05g2221 703 Gene3D Tetratricopeptide repeat domain 388 566 IPR011990 GO:0005515
Glsi05g2221 703 Gene3D Tetratricopeptide repeat domain 181 278 IPR011990 GO:0005515
Glsi05g2221 703 SMART tpr_5 401 434 IPR019734 GO:0005515
Glsi05g2221 703 SMART tpr_5 569 602 IPR019734 GO:0005515
Glsi05g2221 703 SMART tpr_5 361 394 IPR019734 GO:0005515
Glsi05g2221 703 SMART tpr_5 443 476 IPR019734 GO:0005515
Glsi05g2221 703 SMART tpr_5 486 519 IPR019734 GO:0005515
Glsi05g2221 703 SMART tpr_5 611 644 IPR019734 GO:0005515
Glsi05g2221 703 SMART tpr_5 234 267 IPR019734 GO:0005515
Glsi05g2221 703 SMART tpr_5 527 560 IPR019734 GO:0005515
Glsi05g2221 703 SMART tpr_5 277 310 IPR019734 GO:0005515
Glsi05g2221 703 SMART tpr_5 319 352 IPR019734 GO:0005515
Glsi05g2221 703 MobiDBLite consensus disorder prediction 668 697 - -
Glsi05g2221 703 MobiDBLite consensus disorder prediction 128 144 - -
Glsi05g2221 703 SUPERFAMILY TPR-like 236 647 IPR011990 GO:0005515
Glsi05g2221 703 Gene3D Tetratricopeptide repeat domain 567 692 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2221 Glsi-ChrGlsi05 68386129 68391649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2221 240 446 Glycosyltransferase AT3G04240 23.849 7.98e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g2221 05 68386129 68391649 Glsi05g2221 05 68386129 68391649 ECH