Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2207 ATGTCCAGCTCTATGAGCTGTTTTTGCTTCAAGAAGGCTAGGCAAAGGACAAAGCGAGAACACCCCATCATTCTTGCTTCAGAGACATGCTTTACCGTGAACGAGGTGGAGGCTTTGTTTGACTTGTTTAAGAAACTAAGCAGTACTGATGATGGCTTTATACACAAGGAGGAGTTCCGGTTTGCACTTTTGGAGAACAGCAAAAAACAGAATCTATTTGCAGACAGGGTGTTTGATATGTTTGACGTTAAGCGTAATGGAGTAATTGACTTTGAGGAATTTGTTCGCTCACTAAGCATCTTTCATCCAAATGCACCCAAAGAGAAGAAAATAGCATTTGCATTTAGATTGTTCGACCTTGGACGGACTGGATACATTGAGCGTGACGAGTTGAAGGAGATGGTCTTGGCTATTCTGAGCGAATCAGACGTAACACTGTCTGATGATGTTGCAGAATCAATTGTGGATAAGACAATTATGGAGGCGGACTCAAAAGGAGATGGAAAGATTGATGAACAAGAGTGGAAAGAATTTGTAGCGAAGTACCCGTCTCTTCTAAACATCATGACACTTCCATATCTAAAAGGTTGTGTTTGGCTTTGGCAGGGATATAACTCTGGCCTTCCCCAGCTTTGTATTGCACACCGAGCTGACCAAAATAAGGGAGCCTTCTCGATGGGATGCACTTGCTCCAAACACCGTCTTGGGCATGAAGATACAGCACTTCTTGCTGCCCAAACCTGTTTTAATATTTCTGAGATTGAAGGACTGTATGAGTTGTTCAAGAAGTTGAGTAGTTCTATGGTTGATGACGGGGTTATTAGCAAAGAAGAGTTTCAGCTGGGCTTATTTGGAAGTAGCAAGATACAGAGTCTCTTTACAGACAGGGTGTTTCGTTTATTTGACTCAAAAAATGATGGAGTAATAGATTTTGGAGAGTTTGTTCGCGCTATGAGTGTCTTCCACCCAGCGGCATCCCAGGCACAAAAAGCAGCTTTTGCATTTCAAATTTATGATTTAACGCAAACAGGCTTCATTGAACGTGGCGAGGTAAGAGAGATGATATTGGCACTACAAAGGGAGTCAGATTTTACTCTTTCTGAAGACATAATTGAGGCCATAATTGATCAGACATTTAAAGAAGCAGATTTAAAAGGAGATGGAAAGATCAATCCAGAGGAGTGGAAGGAATTTGCGGCTCGAAATCCATCCTTACTGAGGAATATGACAATTCAATATTTAAAGGATCTTAATACTCAATTTCCTAGAAGATTATACTAG 1281 0.4106 MSSSMSCFCFKKARQRTKREHPIILASETCFTVNEVEALFDLFKKLSSTDDGFIHKEEFRFALLENSKKQNLFADRVFDMFDVKRNGVIDFEEFVRSLSIFHPNAPKEKKIAFAFRLFDLGRTGYIERDELKEMVLAILSESDVTLSDDVAESIVDKTIMEADSKGDGKIDEQEWKEFVAKYPSLLNIMTLPYLKGCVWLWQGYNSGLPQLCIAHRADQNKGAFSMGCTCSKHRLGHEDTALLAAQTCFNISEIEGLYELFKKLSSSMVDDGVISKEEFQLGLFGSSKIQSLFTDRVFRLFDSKNDGVIDFGEFVRAMSVFHPAASQAQKAAFAFQIYDLTQTGFIERGEVREMILALQRESDFTLSEDIIEAIIDQTFKEADLKGDGKINPEEWKEFAARNPSLLRNMTIQYLKDLNTQFPRRLY 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2207 426 PANTHER CALCINEURIN B 9 195 IPR045198 GO:0005509|GO:0019722|GO:0019900
Glsi05g2207 426 ProSiteProfiles EF-hand calcium-binding domain profile. 326 361 IPR002048 GO:0005509
Glsi05g2207 426 FunFam calcineurin B-like protein 3 239 426 - -
Glsi05g2207 426 FunFam calcineurin B-like protein 3 21 203 - -
Glsi05g2207 426 Gene3D - 239 426 - -
Glsi05g2207 426 Gene3D - 23 218 - -
Glsi05g2207 426 SMART efh_1 293 321 IPR002048 GO:0005509
Glsi05g2207 426 SMART efh_1 374 402 IPR002048 GO:0005509
Glsi05g2207 426 SMART efh_1 154 182 IPR002048 GO:0005509
Glsi05g2207 426 SMART efh_1 110 138 IPR002048 GO:0005509
Glsi05g2207 426 SMART efh_1 330 358 IPR002048 GO:0005509
Glsi05g2207 426 SMART efh_1 73 101 IPR002048 GO:0005509
Glsi05g2207 426 SMART efh_1 38 66 IPR002048 GO:0005509
Glsi05g2207 426 Pfam EF-hand domain pair 330 398 IPR002048 GO:0005509
Glsi05g2207 426 Pfam EF-hand domain pair 108 178 IPR002048 GO:0005509
Glsi05g2207 426 Pfam EF hand 295 319 IPR002048 GO:0005509
Glsi05g2207 426 CDD EFh 330 400 IPR002048 GO:0005509
Glsi05g2207 426 PRINTS Recoverin family signature 77 98 - -
Glsi05g2207 426 PRINTS Recoverin family signature 124 142 - -
Glsi05g2207 426 PRINTS Recoverin family signature 170 190 - -
Glsi05g2207 426 ProSiteProfiles EF-hand calcium-binding domain profile. 106 141 IPR002048 GO:0005509
Glsi05g2207 426 CDD EFh 39 96 IPR002048 GO:0005509
Glsi05g2207 426 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
Glsi05g2207 426 SUPERFAMILY EF-hand 26 194 IPR011992 -
Glsi05g2207 426 SUPERFAMILY EF-hand 242 414 IPR011992 -
Glsi05g2207 426 ProSiteProfiles EF-hand calcium-binding domain profile. 289 324 IPR002048 GO:0005509
Glsi05g2207 426 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Glsi05g2207 426 Pfam EF hand 75 96 IPR002048 GO:0005509
Glsi05g2207 426 ProSiteProfiles EF-hand calcium-binding domain profile. 150 185 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2207 Glsi-ChrGlsi05 68297940 68302324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2207 231 415 EF-hand Containing Proteins AT1G64480 54.595 2.56e-70 219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g2207 05 68297940 68302324 Glsi05g2207 05 68297940 68302324 ECH